Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040074 through 18771 annotations produced 1 hits



retinin (retinin):

Annotation Number : CG13057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040074
Gbrowse : chr3L:16325018-16325893 (+) // 99.51 //
Probeset : 1633499_at
Accessions : protein= NP_524995;, nucleotide= NM_080256;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter ac
FlyMine data for FBgn0040074.
BDGP gene expression has embryonic in situ data for retinin: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0040074 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.00Down
Head4488 1714 of 416.80Up
Eye10260 2544 of 438.43Up
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland15 40 of 4 0.06Down
Crop3 20 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart47 183 of 4 0.18Down
Fat body7 40 of 4 0.03Down
Ovary2 00 of 4 0.00Down
Testis9 21 of 4 0.00Down
Male accessory glands7 20 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.01Down
Mated spermatheca3 10 of 4 0.01Down
Adult carcass2 00 of 4 0.00Down
Larval CNS4 30 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.01Down
Larval midgut11 30 of 4 0.04Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut7 00 of 4 0.03Down
Larval fat body3 00 of 4 0.00Down
Larval trachea602 11563 of 4 2.26None
Larval carcass2 00 of 4 0.01Down
S2 cells (growing)2 00 of 4 0.01Down
Whole fly267 454 of 4

Looking for FBgn0040074. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime