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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040075 through 18771 annotations produced 1 hits



reptin (rept):

Annotation Number : CG9750
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040075
Gbrowse : chr3L:19248447-19250216 (+) // 100.0 //
Probeset : 1630792_at
Accessions : protein= NP_524156;, nucleotide= NM_079432;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred fr
FlyMine data for FBgn0040075.
BDGP gene expression has embryonic in situ data for rept: 22 pix of staining in 22 body parts.
BioGrid reports that CG9750 interacts with CG11579 CG3340 .
TRiP has 1 RNAi stocks for FBgn0040075 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 34 of 4 0.30Down
Head86 14 of 4 0.30Down
Eye118 24 of 4 0.43Down
Thoracicoabdominal ganglion86 14 of 4 0.30Down
Salivary gland66 54 of 4 0.24Down
Crop75 54 of 4 0.30Down
Midgut105 44 of 4 0.40Down
Tubule136 94 of 4 0.50Down
Hindgut85 24 of 4 0.30Down
Heart78 44 of 4 0.29Down
Fat body80 104 of 4 0.29Down
Ovary470 44 of 4 1.70Up
Testis699 424 of 4 2.60Up
Male accessory glands97 44 of 4 0.40Down
Virgin spermatheca61 54 of 4 0.23Down
Mated spermatheca67 14 of 4 0.25Down
Adult carcass74 24 of 4 0.30Down
Larval CNS454 154 of 4 1.66Up
Larval Salivary gland266 174 of 4 0.97None
Larval midgut76 34 of 4 0.28Down
Larval tubule76 24 of 4 0.30Down
Larval hindgut100 74 of 4 0.37Down
Larval fat body168 574 of 4 0.60None
Larval trachea315 664 of 4 1.15None
Larval carcass135 154 of 4 0.49Down
S2 cells (growing)486 184 of 4 1.78Up
Whole fly273 214 of 4

Looking for FBgn0040075. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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