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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040077 through 18771 annotations produced 1 hits



primo-1 /// primo-2 (primo-1 /// primo-2):

Annotation Number : CG31311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040076 /// FBgn0040077
Gbrowse : chr3R:9535747-9537557 (-) // 100.0 //
Probeset : 1638265_s_at
Accessions : protein= NP_001027185; /// NP_001027186; /// NP_001027187; /// NP_001027188; /// NP_001027189;, nucleotide= NM_001032014; /// NM_001032015; /// NM_001032016; /// NM_001032017; /// NM_001032018;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement
Interpro : 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0003993 // acid phosphatase activity //
FlyMine data for FBgn0040076 /// FBgn0040077.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain312 ± 34 of 4 1.10Up
Head374 ± 244 of 4 1.30Up
Eye316 ± 134 of 4 1.13None
Thoracicoabdominal ganglion374 ± 104 of 4 1.30Up
Salivary gland262 ± 204 of 4 0.94None
Crop333 ± 154 of 4 1.20Up
Midgut257 ± 144 of 4 0.90None
Tubule272 ± 104 of 4 1.00None
Hindgut406 ± 184 of 4 1.50Up
Heart229 ± 64 of 4 0.82Down
Fat body213 ± 194 of 4 0.77Down
Ovary333 ± 54 of 4 1.20Up
Testis544 ± 274 of 4 1.90Up
Male accessory glands287 ± 134 of 4 1.00None
Virgin spermatheca312 ± 204 of 4 1.12None
Mated spermatheca312 ± 244 of 4 1.12None
Adult carcass236 ± 164 of 4 0.80None
Larval CNS165 ± 34 of 4 0.59Down
Larval Salivary gland134 ± 164 of 4 0.48Down
Larval midgut106 ± 84 of 4 0.38Down
Larval tubule187 ± 94 of 4 0.70Down
Larval hindgut224 ± 34 of 4 0.80Down
Larval fat body298 ± 174 of 4 1.10None
Larval trachea261 ± 364 of 4 0.93None
Larval carcass206 ± 84 of 4 0.74Down
S2 cells (growing)141 ± 64 of 4 0.51Down
Whole fly279 ± 74 of 4

Looking for FBgn0040077. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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