FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040080 through 18771 annotations produced 2 hits

Partner of Inscuteable (raps):

Annotation Number : CG5692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040080
Gbrowse : chr3R:23408526-23412099 (+) // 100.0 //
Probeset : 1639984_at
Accessions : protein= NP_524999;, nucleotide= NM_080260;
Pathway : 0005938 // cell cortex // traceable author statement /// 0045177 // apical part of cell // non-traceable author statemen
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005488 // binding // inferred from elec
FlyMine data for FBgn0040080.
BDGP gene expression has embryonic in situ data for raps: 4 pix of staining in 1 body parts.
BioGrid reports that CG5692 interacts with CG6570 CG9927 CG5884 CG6684 CG6803 CG6905 CG7323 CG7386 CG8264 CG8292 CG8697 CG8948 CG5055 CG5055 CG10060 CG11312 CG10261 .
TRiP has 3 RNAi stocks for FBgn0040080 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040080 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	172 ± 12	4 of 4	1.40	Up
Head	93 ± 5	4 of 4	0.80	Down
Eye	99 ± 5	4 of 4	0.82	None
Thoracicoabdominal ganglion	129 ± 2	4 of 4	1.10	None
Salivary gland	174 ± 14	4 of 4	1.43	Up
Crop	152 ± 4	4 of 4	1.20	Up
Midgut	129 ± 5	4 of 4	1.10	None
Tubule	64 ± 6	4 of 4	0.50	Down
Hindgut	134 ± 3	4 of 4	1.10	None
Heart	115 ± 9	4 of 4	0.95	None
Fat body	95 ± 7	4 of 4	0.78	Down
Ovary	238 ± 6	4 of 4	2.00	Up
Testis	35 ± 1	4 of 4	0.30	Down
Male accessory glands	92 ± 4	4 of 4	0.80	Down
Virgin spermatheca	177 ± 11	4 of 4	1.45	Up
Mated spermatheca	188 ± 7	4 of 4	1.54	Up
Adult carcass	56 ± 3	4 of 4	0.50	Down
Larval CNS	468 ± 46	4 of 4	3.84	Up
Larval Salivary gland	169 ± 11	4 of 4	1.39	Up
Larval midgut	224 ± 8	4 of 4	1.84	Up
Larval tubule	63 ± 8	4 of 4	0.50	Down
Larval hindgut	323 ± 4	4 of 4	2.65	Up
Larval fat body	101 ± 9	4 of 4	0.80	None
Larval trachea	192 ± 12	4 of 4	1.58	Up
Larval carcass	121 ± 6	4 of 4	1.00	None
S2 cells (growing)	291 ± 14	4 of 4	2.39	Up
Whole fly	121 ± 7	4 of 4

hoi-polloi /// Partner of Inscuteable (hoip /// raps):

Annotation Number : CG3949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015393
Gbrowse : chr2L:9699833-9700465 (+) // 100.0 //
Probeset : 1640574_at
Accessions : protein= NP_524714; /// NP_524999;, nucleotide= NM_079975; /// NM_080260;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from elec
FlyMine data for FBgn0015393.
BioGrid reports that CG3949 interacts with CG4076 CG4832 CG4878 CG7838 .
VDRC has 3 RNAi stocks for FBgn0015393 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	58 ± 2	4 of 4	0.00	Down
Head	163 ± 5	4 of 4	0.10	Down
Eye	88 ± 9	4 of 4	0.07	Down
Thoracicoabdominal ganglion	100 ± 6	4 of 4	0.10	Down
Salivary gland	153 ± 13	4 of 4	0.13	Down
Crop	218 ± 10	4 of 4	0.20	Down
Midgut	301 ± 13	4 of 4	0.30	Down
Tubule	210 ± 46	4 of 4	0.20	Down
Hindgut	128 ± 2	4 of 4	0.10	Down
Heart	174 ± 9	4 of 4	0.14	Down
Fat body	313 ± 79	4 of 4	0.26	Down
Ovary	1820 ± 34	4 of 4	1.50	Up
Testis	61 ± 3	4 of 4	0.10	Down
Male accessory glands	711 ± 41	4 of 4	0.60	Down
Virgin spermatheca	394 ± 44	4 of 4	0.33	Down
Mated spermatheca	648 ± 21	4 of 4	0.54	Down
Adult carcass	234 ± 11	4 of 4	0.20	Down
Larval CNS	827 ± 33	4 of 4	0.69	Down
Larval Salivary gland	713 ± 61	4 of 4	0.59	Down
Larval midgut	242 ± 26	4 of 4	0.20	Down
Larval tubule	85 ± 4	4 of 4	0.10	Down
Larval hindgut	275 ± 56	4 of 4	0.23	Down
Larval fat body	118 ± 9	4 of 4	0.10	Down
Larval trachea	918 ± 173	4 of 4	0.76	Down
Larval carcass	551 ± 164	4 of 4	0.46	Down
S2 cells (growing)	614 ± 22	4 of 4	0.51	Down
Whole fly	1202 ± 63	4 of 4

Looking for FBgn0040080. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720