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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040089 through 18771 annotations produced 1 hits



meso18E (meso18E):

Annotation Number : CG14233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040089
Gbrowse : chrX:19600430-19607074 (-) // 100.0 //
Probeset : 1636780_at
Accessions : protein= NP_001162799; /// NP_652615;, nucleotide= NM_001169328; /// NM_144358;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040089.
BDGP gene expression has embryonic in situ data for meso18E: 18 pix of staining in 11 body parts.
BioGrid reports that CG14233 interacts with CG14715 .
VDRC has 1 RNAi stocks for FBgn0040089 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.20Down
Head33 ± 44 of 4 0.90None
Eye11 ± 14 of 4 0.31Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.11Down
Crop104 ± 24 of 4 2.90Up
Midgut10 ± 11 of 4 0.30Down
Tubule3 ± 00 of 4 0.10Down
Hindgut38 ± 34 of 4 1.00None
Heart70 ± 54 of 4 1.91Up
Fat body110 ± 104 of 4 2.99Up
Ovary17 ± 24 of 4 0.50Down
Testis35 ± 14 of 4 1.00None
Male accessory glands17 ± 22 of 4 0.50Down
Virgin spermatheca29 ± 24 of 4 0.80None
Mated spermatheca56 ± 54 of 4 1.54Up
Adult carcass88 ± 34 of 4 2.40Up
Larval CNS3 ± 30 of 4 0.11Down
Larval Salivary gland9 ± 23 of 4 0.26Down
Larval midgut11 ± 11 of 4 0.32Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut30 ± 14 of 4 0.81None
Larval fat body33 ± 14 of 4 0.90None
Larval trachea7 ± 22 of 4 0.20Down
Larval carcass57 ± 64 of 4 1.56Up
S2 cells (growing)102 ± 44 of 4 2.78Up
Whole fly36 ± 34 of 4

Looking for FBgn0040089. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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