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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040092 through 18771 annotations produced 1 hits



lectin-46Cb (lectin-46Cb):

Annotation Number : CG1652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040092
Gbrowse : chr2R:5703014-5704105 (+) // 100.0 //
Probeset : 1626068_at
Accessions : protein= NP_001163102; /// NP_652632;, nucleotide= NM_001169631; /// NM_144375;
Pathway : post-mating // inferred from mutant phenotype /// 0046692 // sperm competition // inferred from direct assay"
FlyMine data for FBgn0040092.
BDGP gene expression has embryonic in situ data for lectin-46Cb: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 14 of 4 0.30Down
Head22 ± 14 of 4 0.10Down
Eye39 ± 24 of 4 0.25Down
Thoracicoabdominal ganglion12 ± 12 of 4 0.10Down
Salivary gland11 ± 20 of 4 0.07Down
Crop20 ± 23 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut5 ± 21 of 4 0.00Down
Heart7 ± 12 of 4 0.05Down
Fat body8 ± 50 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis18 ± 82 of 4 0.10Down
Male accessory glands10132 ± 2334 of 464.70Up
Virgin spermatheca5 ± 10 of 4 0.03Down
Mated spermatheca6 ± 10 of 4 0.04Down
Adult carcass21 ± 62 of 4 0.10Down
Larval CNS5 ± 10 of 4 0.04Down
Larval Salivary gland13 ± 20 of 4 0.08Down
Larval midgut2 ± 00 of 4 0.01Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut8 ± 12 of 4 0.06Down
Larval fat body7 ± 00 of 4 0.00Down
Larval trachea7 ± 20 of 4 0.05Down
Larval carcass3 ± 10 of 4 0.03Down
S2 cells (growing)81 ± 64 of 4 0.52Down
Whole fly156 ± 104 of 4

Looking for FBgn0040092. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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