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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040104 through 18771 annotations produced 1 hits



Lectin24A (lectin-24A):

Annotation Number : CG3410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040104
Gbrowse : chr2L:3716879-3717728 (-) // 100.0 //
Probeset : 1637857_at
Accessions : protein= NP_652637;, nucleotide= NM_144380;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005534 // galactose binding // inferred from sequence or
FlyMine data for FBgn0040104.
VDRC has 3 RNAi stocks for FBgn0040104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.40None
Head35 133 of 4 3.90None
Eye17 53 of 4 1.88None
Thoracicoabdominal ganglion4 10 of 4 0.40None
Salivary gland9 30 of 4 1.04None
Crop5 10 of 4 0.60None
Midgut217 114 of 424.00Up
Tubule4 00 of 4 0.50Down
Hindgut2 00 of 4 0.30None
Heart11 22 of 4 1.22None
Fat body23 233 of 4 2.59None
Ovary1 00 of 4 0.20None
Testis1 00 of 4 0.20None
Male accessory glands3 20 of 4 0.40None
Virgin spermatheca78 653 of 4 8.63None
Mated spermatheca27 152 of 4 3.03None
Adult carcass8 20 of 4 0.90None
Larval CNS4 40 of 4 0.51None
Larval Salivary gland6 11 of 4 0.69None
Larval midgut3 10 of 4 0.39None
Larval tubule7 11 of 4 0.80None
Larval hindgut44 134 of 4 4.95None
Larval fat body11 40 of 4 1.30None
Larval trachea3 31 of 4 0.42None
Larval carcass12 41 of 4 1.37None
S2 cells (growing)1 00 of 4 0.15None
Whole fly9 31 of 4

Looking for FBgn0040104. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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