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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040153 through 18771 annotations produced 1 hits



lethal (1) G0469 (l(1)G0469):

Annotation Number : CG32597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040153
Gbrowse : chrX:14099941-14105488 (-) // 99.66 //
Probeset : 1627653_at
Accessions : protein= NP_001096980; /// NP_727763;, nucleotide= NM_001103510; /// NM_167395;
FlyMine data for FBgn0040153.
VDRC has 5 RNAi stocks for FBgn0040153 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 04 of 4 1.50Up
Head26 24 of 4 0.80None
Eye89 34 of 4 2.83Up
Thoracicoabdominal ganglion19 14 of 4 0.60Down
Salivary gland75 84 of 4 2.38Up
Crop38 24 of 4 1.20None
Midgut135 54 of 4 4.30Up
Tubule78 254 of 4 2.50None
Hindgut57 14 of 4 1.80Up
Heart22 14 of 4 0.71Down
Fat body11 80 of 4 0.36Down
Ovary36 14 of 4 1.10None
Testis5 10 of 4 0.20Down
Male accessory glands15 42 of 4 0.50Down
Virgin spermatheca37 34 of 4 1.17None
Mated spermatheca50 54 of 4 1.58Up
Adult carcass23 41 of 4 0.70None
Larval CNS23 34 of 4 0.73Down
Larval Salivary gland37 54 of 4 1.17None
Larval midgut85 84 of 4 2.71Up
Larval tubule91 54 of 4 2.90Up
Larval hindgut57 14 of 4 1.80Up
Larval fat body38 44 of 4 1.20None
Larval trachea63 204 of 4 2.02Up
Larval carcass19 73 of 4 0.63None
S2 cells (growing)4 10 of 4 0.13Down
Whole fly31 24 of 4

Looking for FBgn0040153. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime