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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040206 through 18771 annotations produced 1 hits

kurtz (krz):

Annotation Number : CG1487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040206
Gbrowse : chr3R:27873826-27877711 (-) // 100.0 //
Probeset : 1623793_at
Accessions : protein= NP_524988;, nucleotide= NM_080249;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040206.
BDGP gene expression has embryonic in situ data for krz: 4 pix of staining in 1 body parts.
Homophila reports that CG1487 is a close match (5e-74) to human gene SAG (NP_000532), a gene associated with Oguchi disease-1, 258100 (3).
BioGrid reports that CG1487 interacts with CG15172 CG31247 CG32626 CG5877 CG6254 CG14931 CG32100 CG32354 CG32491 CG3810 CG3929 CG3995 CG4461 CG9091 CG15319 .
TRiP has 2 RNAi stocks for FBgn0040206 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040206 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 34 of 4 1.70Up
Head31 64 of 4 1.20None
Eye7 22 of 4 0.27Down
Thoracicoabdominal ganglion20 14 of 4 0.80None
Salivary gland31 44 of 4 1.17None
Crop171 124 of 4 6.30Up
Midgut25 04 of 4 0.90None
Tubule14 13 of 4 0.50Down
Hindgut42 34 of 4 1.60Up
Heart31 44 of 4 1.17None
Fat body83 194 of 4 3.05Up
Ovary21 14 of 4 0.80None
Testis7 13 of 4 0.30Down
Male accessory glands22 14 of 4 0.80None
Virgin spermatheca15 04 of 4 0.57Down
Mated spermatheca16 14 of 4 0.60Down
Adult carcass45 24 of 4 1.70Up
Larval CNS54 84 of 4 1.99Up
Larval Salivary gland64 14 of 4 2.38Up
Larval midgut21 04 of 4 0.77None
Larval tubule33 34 of 4 1.20None
Larval hindgut47 34 of 4 1.75Up
Larval fat body17 24 of 4 0.60Down
Larval trachea25 44 of 4 0.95None
Larval carcass36 14 of 4 1.33Up
S2 cells (growing)112 84 of 4 4.12Up
Whole fly27 24 of 4

Looking for FBgn0040206. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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