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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040207 through 18771 annotations produced 1 hits



katanin 80 (kat80):

Annotation Number : CG13956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040207
Gbrowse : chrX:16161037-16170213 (-) // 100.0 //
Probeset : 1639326_s_at
Accessions : protein= NP_523363; /// NP_727940;, nucleotide= NM_078639; /// NM_167488;
Pathway : 0008352 // katanin complex // inferred from sequence or structural similarity /// 0008352 // katanin complex // non-trac
Interpro : 0008017 // microtubule binding // inferred from sequence or structural similarity
FlyMine data for FBgn0040207.
Homophila reports that CG13956 is a close match (3e-17) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
BioGrid reports that CG13956 interacts with CG8942 .
VDRC has 3 RNAi stocks for FBgn0040207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 14 of 4 0.80None
Head69 34 of 4 0.50Down
Eye88 44 of 4 0.66Down
Thoracicoabdominal ganglion82 14 of 4 0.60Down
Salivary gland236 184 of 4 1.77Up
Crop101 44 of 4 0.80Down
Midgut58 14 of 4 0.40Down
Tubule55 14 of 4 0.40Down
Hindgut45 24 of 4 0.30Down
Heart49 24 of 4 0.37Down
Fat body45 64 of 4 0.34Down
Ovary397 254 of 4 3.00Up
Testis15 24 of 4 0.10Down
Male accessory glands63 24 of 4 0.50Down
Virgin spermatheca68 04 of 4 0.52Down
Mated spermatheca82 14 of 4 0.62Down
Adult carcass48 34 of 4 0.40Down
Larval CNS177 64 of 4 1.33Up
Larval Salivary gland127 44 of 4 0.96None
Larval midgut58 14 of 4 0.43Down
Larval tubule106 54 of 4 0.80Down
Larval hindgut69 44 of 4 0.52Down
Larval fat body53 84 of 4 0.40Down
Larval trachea127 54 of 4 0.96None
Larval carcass126 44 of 4 0.94None
S2 cells (growing)122 34 of 4 0.92Down
Whole fly133 24 of 4

Looking for FBgn0040207. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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