FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040207 through 18771 annotations produced 1 hits

katanin 80 (kat80):

Annotation Number : CG13956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040207
Gbrowse : chrX:16161037-16170213 (-) // 100.0 //
Probeset : 1639326_s_at
Accessions : protein= NP_523363; /// NP_727940;, nucleotide= NM_078639; /// NM_167488;
Pathway : 0008352 // katanin complex // inferred from sequence or structural similarity /// 0008352 // katanin complex // non-trac
Interpro : 0008017 // microtubule binding // inferred from sequence or structural similarity
FlyMine data for FBgn0040207.
Homophila reports that CG13956 is a close match (3e-17) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
BioGrid reports that CG13956 interacts with CG8942 .
VDRC has 3 RNAi stocks for FBgn0040207 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	110 ± 1	4 of 4	0.80	None
Head	69 ± 3	4 of 4	0.50	Down
Eye	88 ± 4	4 of 4	0.66	Down
Thoracicoabdominal ganglion	82 ± 1	4 of 4	0.60	Down
Salivary gland	236 ± 18	4 of 4	1.77	Up
Crop	101 ± 4	4 of 4	0.80	Down
Midgut	58 ± 1	4 of 4	0.40	Down
Tubule	55 ± 1	4 of 4	0.40	Down
Hindgut	45 ± 2	4 of 4	0.30	Down
Heart	49 ± 2	4 of 4	0.37	Down
Fat body	45 ± 6	4 of 4	0.34	Down
Ovary	397 ± 25	4 of 4	3.00	Up
Testis	15 ± 2	4 of 4	0.10	Down
Male accessory glands	63 ± 2	4 of 4	0.50	Down
Virgin spermatheca	68 ± 0	4 of 4	0.52	Down
Mated spermatheca	82 ± 1	4 of 4	0.62	Down
Adult carcass	48 ± 3	4 of 4	0.40	Down
Larval CNS	177 ± 6	4 of 4	1.33	Up
Larval Salivary gland	127 ± 4	4 of 4	0.96	None
Larval midgut	58 ± 1	4 of 4	0.43	Down
Larval tubule	106 ± 5	4 of 4	0.80	Down
Larval hindgut	69 ± 4	4 of 4	0.52	Down
Larval fat body	53 ± 8	4 of 4	0.40	Down
Larval trachea	127 ± 5	4 of 4	0.96	None
Larval carcass	126 ± 4	4 of 4	0.94	None
S2 cells (growing)	122 ± 3	4 of 4	0.92	Down
Whole fly	133 ± 2	4 of 4

Looking for FBgn0040207. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720