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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040208 through 18771 annotations produced 1 hits



katanin 60 (katanin-60):

Annotation Number : CG10229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040208
Gbrowse : chr3R:1053009-1057940 (-) // 100.0 //
Probeset : 1626706_at
Accessions : protein= NP_524997;, nucleotide= NM_080258;
Pathway : 0008352 // katanin complex // inferred from sequence or structural similarity /// 0008352 // katanin complex // non-trac
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0040208.
BDGP gene expression has embryonic in situ data for katanin-60: 5 pix of staining in 1 body parts.
Homophila reports that CG10229 is a close match (9e-16) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
BioGrid reports that CG10229 interacts with CG10229 CG13956 CG18076 CG7856 CG11771 CG14802 CG5486 CG7281 .
TRiP has 2 RNAi stocks for FBgn0040208 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040208 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 ± 24 of 4 1.00None
Head166 ± 54 of 4 0.60Down
Eye170 ± 14 of 4 0.65Down
Thoracicoabdominal ganglion237 ± 94 of 4 0.90None
Salivary gland289 ± 194 of 4 1.10None
Crop249 ± 64 of 4 0.90None
Midgut204 ± 104 of 4 0.80Down
Tubule191 ± 104 of 4 0.70Down
Hindgut223 ± 24 of 4 0.80Down
Heart133 ± 44 of 4 0.51Down
Fat body127 ± 174 of 4 0.48Down
Ovary526 ± 124 of 4 2.00Up
Testis95 ± 34 of 4 0.40Down
Male accessory glands203 ± 84 of 4 0.80Down
Virgin spermatheca136 ± 94 of 4 0.52Down
Mated spermatheca127 ± 34 of 4 0.48Down
Adult carcass154 ± 24 of 4 0.60Down
Larval CNS405 ± 394 of 4 1.54Up
Larval Salivary gland284 ± 74 of 4 1.08None
Larval midgut217 ± 184 of 4 0.83None
Larval tubule292 ± 44 of 4 1.10None
Larval hindgut250 ± 134 of 4 0.95None
Larval fat body181 ± 54 of 4 0.70Down
Larval trachea228 ± 224 of 4 0.87None
Larval carcass255 ± 14 of 4 0.97None
S2 cells (growing)300 ± 64 of 4 1.14Up
Whole fly262 ± 114 of 4

Looking for FBgn0040208. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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