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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040212 through 18771 annotations produced 1 hits



Glycerol 3-phosphate acyltransferase (Dhap-at):

Annotation Number : CG4625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040212
Gbrowse : chr3R:21311339-21314810 (-) // 99.84 //
Probeset : 1632807_at
Accessions : protein= NP_525010;, nucleotide= NM_080271;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from s
Interpro : 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity /// 000436
FlyMine data for FBgn0040212.
Homophila reports that CG4625 is a close match (1e-74) to human gene DHAPAT;GNPAT (NP_055051), a gene associated with Chondrodysplasia punctata, rhizomelic, type 2, 222765 (3).
VDRC has 2 RNAi stocks for FBgn0040212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 ± 64 of 4 2.00Up
Head90 ± 34 of 4 1.00None
Eye125 ± 154 of 4 1.39None
Thoracicoabdominal ganglion169 ± 64 of 4 1.90Up
Salivary gland91 ± 24 of 4 1.02None
Crop462 ± 64 of 4 5.10Up
Midgut121 ± 84 of 4 1.30Up
Tubule162 ± 354 of 4 1.80Up
Hindgut129 ± 54 of 4 1.40Up
Heart140 ± 114 of 4 1.55Up
Fat body143 ± 194 of 4 1.59Up
Ovary211 ± 54 of 4 2.30Up
Testis78 ± 34 of 4 0.90None
Male accessory glands16 ± 13 of 4 0.20Down
Virgin spermatheca93 ± 94 of 4 1.03None
Mated spermatheca94 ± 74 of 4 1.05None
Adult carcass66 ± 34 of 4 0.70Down
Larval CNS124 ± 54 of 4 1.38Up
Larval Salivary gland153 ± 64 of 4 1.70Up
Larval midgut118 ± 84 of 4 1.32Up
Larval tubule112 ± 84 of 4 1.20None
Larval hindgut100 ± 44 of 4 1.12None
Larval fat body45 ± 54 of 4 0.50Down
Larval trachea86 ± 254 of 4 0.95None
Larval carcass41 ± 44 of 4 0.46Down
S2 cells (growing)142 ± 64 of 4 1.58Up
Whole fly90 ± 54 of 4

Looking for FBgn0040212. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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