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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040232 through 18771 annotations produced 1 hits



CENP-meta (cmet):

Annotation Number : CG6392
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040232
Gbrowse : chr2L:11260827-11269179 (-) // 99.93 //
Probeset : 1624191_at
Accessions : protein= NP_524993;, nucleotide= NM_080254;
Pathway : "0000775 // chromosome
Interpro : centromeric region // non-traceable author statement /// 0000776 // kinetochore // inferred from direct assay /// 00007
FlyMine data for FBgn0040232.
Homophila reports that CG6392 is a close match (7e-41) to human gene CFEOM1;FEOM1;KIAA1708;KIF21A (NP_060111), a gene associated with Fibrosis of extraocular muscles, congenital, 1, 135700 (3).
BioGrid reports that CG6392 interacts with CG6934 CG6998 .
TRiP has 1 RNAi stocks for FBgn0040232 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040232 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 13 of 4 0.10Down
Head6 ± 01 of 4 0.10Down
Eye3 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.10Down
Salivary gland14 ± 61 of 4 0.15Down
Crop9 ± 12 of 4 0.10Down
Midgut6 ± 30 of 4 0.10Down
Tubule12 ± 13 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart3 ± 00 of 4 0.03Down
Fat body10 ± 43 of 4 0.10Down
Ovary305 ± 184 of 4 3.00Up
Testis237 ± 244 of 4 2.40Up
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca13 ± 04 of 4 0.14Down
Mated spermatheca10 ± 23 of 4 0.10Down
Adult carcass13 ± 22 of 4 0.10Down
Larval CNS214 ± 114 of 4 2.13Up
Larval Salivary gland11 ± 12 of 4 0.11Down
Larval midgut17 ± 20 of 4 0.18Down
Larval tubule47 ± 24 of 4 0.50Down
Larval hindgut19 ± 14 of 4 0.19Down
Larval fat body46 ± 144 of 4 0.50Down
Larval trachea51 ± 84 of 4 0.52Down
Larval carcass37 ± 14 of 4 0.37Down
S2 cells (growing)312 ± 24 of 4 3.10Up
Whole fly100 ± 124 of 4

Looking for FBgn0040232. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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