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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040233 through 18771 annotations produced 1 hits



CENP-ana /// (cana /// CG33695):

Annotation Number : CG32955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040233 /// FBgn0052831
Gbrowse : chr2L:11269726-11279846 (+) // 100.0 //
Probeset : 1629720_s_at
Accessions : protein= NP_001027247; /// NP_001027248; /// NP_001027249; /// NP_001027250; /// NP_001027251; /// NP_001027252;, nucleotide= NM_001032076; /// NM_001032077; /// NM_001032078; /// NM_001032079; /// NM_001032080; /// NM_001032081;
Pathway : 0005871 // kinesin complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred fro
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0040233 /// FBgn0052831.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 34 of 4 1.10Up
Head48 ± 14 of 4 0.50Down
Eye88 ± 24 of 4 0.97None
Thoracicoabdominal ganglion69 ± 44 of 4 0.80Down
Salivary gland60 ± 24 of 4 0.67Down
Crop45 ± 24 of 4 0.50Down
Midgut27 ± 22 of 4 0.30Down
Tubule37 ± 24 of 4 0.40Down
Hindgut33 ± 24 of 4 0.40Down
Heart35 ± 24 of 4 0.39Down
Fat body30 ± 24 of 4 0.33Down
Ovary207 ± 44 of 4 2.30Up
Testis26 ± 24 of 4 0.30Down
Male accessory glands35 ± 14 of 4 0.40Down
Virgin spermatheca28 ± 24 of 4 0.31Down
Mated spermatheca31 ± 24 of 4 0.35Down
Adult carcass36 ± 24 of 4 0.40Down
Larval CNS171 ± 184 of 4 1.89Up
Larval Salivary gland62 ± 34 of 4 0.69Down
Larval midgut41 ± 34 of 4 0.45Down
Larval tubule35 ± 24 of 4 0.40Down
Larval hindgut33 ± 24 of 4 0.37Down
Larval fat body35 ± 44 of 4 0.40Down
Larval trachea97 ± 24 of 4 1.07Up
Larval carcass49 ± 44 of 4 0.54Down
S2 cells (growing)76 ± 14 of 4 0.84Down
Whole fly90 ± 24 of 4

Looking for FBgn0040233. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime