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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040252 through 18771 annotations produced 1 hits



Ugt86Dh (Ugt86Dh):

Annotation Number : CG4772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040252
Gbrowse : chr3R:7001293-7003679 (+) // 100.0 //
Probeset : 1638981_at
Accessions : protein= NP_652621;, nucleotide= NM_144364;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0040252.
Homophila reports that CG4772 is a close match (7e-40) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 2 RNAi stocks for FBgn0040252 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland2 ± 10 of 4 0.16Down
Crop1 ± 00 of 4 0.10Down
Midgut260 ± 124 of 416.40Up
Tubule40 ± 34 of 4 2.50Up
Hindgut71 ± 24 of 4 4.50Up
Heart0 ± 00 of 4 0.06Down
Fat body4 ± 20 of 4 0.25Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.13Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS3 ± 11 of 4 0.19Down
Larval Salivary gland1 ± 00 of 4 0.10Down
Larval midgut225 ± 304 of 414.24Up
Larval tubule20 ± 34 of 4 1.30None
Larval hindgut57 ± 104 of 4 3.61Up
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea0 ± 10 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.10Down
S2 cells (growing)1 ± 00 of 4 0.11Down
Whole fly15 ± 14 of 4

Looking for FBgn0040252. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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