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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040279 through 18771 annotations produced 1 hits

Osiris (Osi14):

Annotation Number : CG1155
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040279
Gbrowse : chr3R:2124853-2126472 (+) // 100.0 //
Probeset : 1628121_at
Accessions : protein= NP_649635;, nucleotide= NM_141378;
FlyMine data for FBgn0040279.
BDGP gene expression has embryonic in situ data for SP558: 33 pix of staining in 13 body parts.
VDRC has 2 RNAi stocks for FBgn0040279 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10None
Head3 10 of 4 0.10None
Eye3 00 of 4 0.13None
Thoracicoabdominal ganglion6 10 of 4 0.20None
Salivary gland17 60 of 4 0.62None
Crop10 00 of 4 0.40None
Midgut7 20 of 4 0.30None
Tubule6 10 of 4 0.20Down
Hindgut27 211 of 4 1.00None
Heart3 11 of 4 0.12None
Fat body8 40 of 4 0.29None
Ovary5 10 of 4 0.20None
Testis5 00 of 4 0.20None
Male accessory glands2 00 of 4 0.10None
Virgin spermatheca13 10 of 4 0.47None
Mated spermatheca8 40 of 4 0.32None
Adult carcass8 40 of 4 0.30None
Larval CNS8 20 of 4 0.29None
Larval Salivary gland29 04 of 4 1.06None
Larval midgut19 20 of 4 0.69None
Larval tubule7 20 of 4 0.30None
Larval hindgut37 24 of 4 1.34None
Larval fat body5 20 of 4 0.20None
Larval trachea6 51 of 4 0.23None
Larval carcass8 20 of 4 0.31None
S2 cells (growing)7 10 of 4 0.25None
Whole fly27 112 of 4

Looking for FBgn0040279. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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