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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040285 through 18771 annotations produced 3 hits



anon-fast-evolving-1F7 (Scamp):

Annotation Number : CG9195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040285
Gbrowse : chrX:15343106-15343922 (-) // 100.0 //
Probeset : 1641444_a_at
Accessions : protein= NP_573023; /// NP_727850;, nucleotide= NM_132795; /// NM_167442;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement /// 0016021 // integral to membrane // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040285.
TRiP has 1 RNAi stocks for FBgn0040285 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 14 of 4 1.40None
Head27 52 of 4 0.80None
Eye274 94 of 4 8.59Up
Thoracicoabdominal ganglion37 63 of 4 1.20None
Salivary gland43 113 of 4 1.35None
Crop49 14 of 4 1.60Up
Midgut67 54 of 4 2.10Up
Tubule6 00 of 4 0.20Down
Hindgut55 84 of 4 1.70None
Heart271 134 of 4 8.50Up
Fat body45 114 of 4 1.42None
Ovary50 44 of 4 1.60Up
Testis12 00 of 4 0.40Down
Male accessory glands43 54 of 4 1.40None
Virgin spermatheca8 31 of 4 0.28Down
Mated spermatheca9 20 of 4 0.28Down
Adult carcass50 94 of 4 1.60None
Larval CNS27 14 of 4 0.86None
Larval Salivary gland64 64 of 4 2.01Up
Larval midgut78 64 of 4 2.45Up
Larval tubule85 94 of 4 2.70Up
Larval hindgut42 54 of 4 1.32None
Larval fat body92 104 of 4 2.90Up
Larval trachea245 244 of 4 7.71Up
Larval carcass24 33 of 4 0.78None
S2 cells (growing)233 124 of 4 7.31Up
Whole fly31 44 of 4



anon-fast-evolving-1F7 (Scamp):

Annotation Number : CG9195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040285
Gbrowse : chrX:15343106-15343922 (-) // 100.0 //
Probeset : 1626101_at
Accessions : protein= NP_573023; /// NP_727850;, nucleotide= NM_132795; /// NM_167442;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement /// 0016021 // integral to membrane // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040285.
TRiP has 1 RNAi stocks for FBgn0040285 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 1.70None
Head3 20 of 4 0.80None
Eye2 00 of 4 0.57None
Thoracicoabdominal ganglion8 20 of 4 1.70None
Salivary gland10 40 of 4 2.16None
Crop7 20 of 4 1.60None
Midgut6 20 of 4 1.40None
Tubule2 00 of 4 0.50Down
Hindgut2 00 of 4 0.50None
Heart5 20 of 4 1.24None
Fat body8 50 of 4 1.69None
Ovary2 00 of 4 0.40None
Testis2 10 of 4 0.50None
Male accessory glands4 20 of 4 1.00None
Virgin spermatheca2 00 of 4 0.59None
Mated spermatheca6 30 of 4 1.44None
Adult carcass6 30 of 4 1.40None
Larval CNS7 20 of 4 1.55None
Larval Salivary gland4 20 of 4 0.94None
Larval midgut16 10 of 4 3.38Up
Larval tubule3 10 of 4 0.80None
Larval hindgut2 00 of 4 0.56None
Larval fat body30 40 of 4 6.40Up
Larval trachea1 00 of 4 0.38None
Larval carcass4 20 of 4 0.92None
S2 cells (growing)9 20 of 4 2.02None
Whole fly4 10 of 4



anon-fast-evolving-1F7 (Scamp):

Annotation Number : CG9195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040285
Gbrowse : chrX:15340210-15343922 (-) // 100.0 //
Probeset : 1636178_at
Accessions : protein= NP_573023; /// NP_727850;, nucleotide= NM_132795; /// NM_167442;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement /// 0016021 // integral to membrane // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040285.
TRiP has 1 RNAi stocks for FBgn0040285 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 34 of 4 1.10None
Head65 34 of 4 1.20None
Eye45 34 of 4 0.84None
Thoracicoabdominal ganglion110 104 of 4 2.00Up
Salivary gland109 204 of 4 2.02None
Crop46 54 of 4 0.90None
Midgut148 134 of 4 2.70Up
Tubule49 04 of 4 0.90Down
Hindgut75 44 of 4 1.40Up
Heart49 44 of 4 0.92None
Fat body112 354 of 4 2.08Up
Ovary113 44 of 4 2.10Up
Testis33 14 of 4 0.60Down
Male accessory glands185 104 of 4 3.40Up
Virgin spermatheca42 34 of 4 0.78None
Mated spermatheca50 24 of 4 0.92None
Adult carcass134 354 of 4 2.50None
Larval CNS82 74 of 4 1.52Up
Larval Salivary gland254 104 of 4 4.70Up
Larval midgut541 294 of 410.00Up
Larval tubule143 84 of 4 2.70Up
Larval hindgut226 204 of 4 4.19Up
Larval fat body237 214 of 4 4.40Up
Larval trachea37 104 of 4 0.70None
Larval carcass163 84 of 4 3.02Up
S2 cells (growing)535 314 of 4 9.90Up
Whole fly54 54 of 4

Looking for FBgn0040285. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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