FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040290 through 18771 annotations produced 1 hits

RecQ4 (RecQ4):

Annotation Number : CG7487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040290
Gbrowse : chr3L:8163918-8168998 (-) // 100.0 //
Probeset : 1623031_a_at
Accessions : protein= NP_652607;, nucleotide= NM_144350;
Interpro : "0000739 // DNA strand annealing activity // inferred from mutant phenotype /// 0003676 // nucleic acid binding // infer
FlyMine data for FBgn0040290.
BDGP gene expression has embryonic in situ data for RecQ4: 4 pix of staining in 1 body parts.
Homophila reports that CG7487 is a close match (4e-43) to human gene BLM;BS;RECQ2;RECQL3 (NP_000048), a gene associated with Bloom syndrome, 210900 (3).
BioGrid reports that CG7487 interacts with CG15676 CG32169 CG18094 CG11182 CG13510 CG14827 CG17180 CG7948 CG5568 CG5731 CG11100 CG11963 CG18273 CG2189 CG8823 CG5009 CG1962 CG8676 CG1765 CG6923 CG9027 CG18572 CG7313 CG14534 CG12428 Dmel CG32904 CG8181 .
VDRC has 2 RNAi stocks for FBgn0040290 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	0.10	Down
Head	9 ± 1	3 of 4	0.10	Down
Eye	5 ± 1	1 of 4	0.06	Down
Thoracicoabdominal ganglion	6 ± 1	1 of 4	0.10	Down
Salivary gland	11 ± 2	0 of 4	0.12	Down
Crop	10 ± 1	0 of 4	0.10	Down
Midgut	6 ± 1	0 of 4	0.10	Down
Tubule	8 ± 2	1 of 4	0.10	Down
Hindgut	9 ± 1	1 of 4	0.10	Down
Heart	5 ± 1	0 of 4	0.06	Down
Fat body	17 ± 5	3 of 4	0.19	Down
Ovary	187 ± 4	4 of 4	2.00	Up
Testis	9 ± 1	1 of 4	0.10	Down
Male accessory glands	11 ± 2	1 of 4	0.10	Down
Virgin spermatheca	10 ± 0	3 of 4	0.12	Down
Mated spermatheca	9 ± 1	3 of 4	0.10	Down
Adult carcass	12 ± 1	1 of 4	0.10	Down
Larval CNS	65 ± 6	4 of 4	0.71	Down
Larval Salivary gland	50 ± 3	4 of 4	0.55	Down
Larval midgut	10 ± 1	2 of 4	0.12	Down
Larval tubule	9 ± 1	1 of 4	0.10	Down
Larval hindgut	21 ± 1	4 of 4	0.23	Down
Larval fat body	9 ± 3	1 of 4	0.10	Down
Larval trachea	39 ± 7	4 of 4	0.43	Down
Larval carcass	32 ± 3	4 of 4	0.35	Down
S2 cells (growing)	59 ± 2	4 of 4	0.65	Down
Whole fly	92 ± 7	4 of 4

Looking for FBgn0040290. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720