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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040294 through 18771 annotations produced 1 hits



Plenty of SH3s (POSH):

Annotation Number : CG4909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040294
Gbrowse : chr2R:13456242-13459827 (+) // 100.0 //
Probeset : 1625253_at
Accessions : protein= NP_523776;, nucleotide= NM_079052;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0005515 // protein binding // inferred fr
FlyMine data for FBgn0040294.
BDGP gene expression has embryonic in situ data for POSH: 12 pix of staining in 9 body parts.
BioGrid reports that CG4909 interacts with CG7570 CG9375 .
VDRC has 2 RNAi stocks for FBgn0040294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 14 of 4 0.50Down
Head60 ± 24 of 4 0.40Down
Eye42 ± 14 of 4 0.29Down
Thoracicoabdominal ganglion70 ± 34 of 4 0.50Down
Salivary gland85 ± 54 of 4 0.58Down
Crop95 ± 24 of 4 0.60Down
Midgut55 ± 14 of 4 0.40Down
Tubule67 ± 24 of 4 0.50Down
Hindgut59 ± 44 of 4 0.40Down
Heart42 ± 14 of 4 0.29Down
Fat body63 ± 74 of 4 0.43Down
Ovary457 ± 74 of 4 3.10Up
Testis39 ± 14 of 4 0.30Down
Male accessory glands67 ± 64 of 4 0.50Down
Virgin spermatheca75 ± 44 of 4 0.51Down
Mated spermatheca86 ± 34 of 4 0.58Down
Adult carcass73 ± 64 of 4 0.50Down
Larval CNS158 ± 94 of 4 1.07None
Larval Salivary gland108 ± 54 of 4 0.74Down
Larval midgut36 ± 14 of 4 0.25Down
Larval tubule40 ± 24 of 4 0.30Down
Larval hindgut81 ± 44 of 4 0.55Down
Larval fat body35 ± 14 of 4 0.20Down
Larval trachea135 ± 134 of 4 0.92None
Larval carcass93 ± 64 of 4 0.63Down
S2 cells (growing)126 ± 54 of 4 0.85Down
Whole fly148 ± 74 of 4

Looking for FBgn0040294. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime