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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040296 through 18771 annotations produced 1 hits



Ocho (Ocho):

Annotation Number : CG3396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040296
Gbrowse : chr3L:14967740-14968853 (+) // 100.0 //
Probeset : 1625606_at
Accessions : protein= NP_536775;, nucleotide= NM_080514;
FlyMine data for FBgn0040296.
BDGP gene expression has embryonic in situ data for Ocho: 51 pix of staining in 19 body parts.
VDRC has 2 RNAi stocks for FBgn0040296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 0.90None
Head4 ± 20 of 4 0.40None
Eye2 ± 10 of 4 0.22None
Thoracicoabdominal ganglion5 ± 10 of 4 0.60None
Salivary gland9 ± 30 of 4 0.95None
Crop9 ± 30 of 4 0.90None
Midgut12 ± 10 of 4 1.30None
Tubule6 ± 10 of 4 0.70Down
Hindgut7 ± 10 of 4 0.70None
Heart2 ± 10 of 4 0.25None
Fat body4 ± 30 of 4 0.44None
Ovary6 ± 21 of 4 0.60None
Testis3 ± 00 of 4 0.30None
Male accessory glands9 ± 20 of 4 0.90None
Virgin spermatheca4 ± 20 of 4 0.48None
Mated spermatheca5 ± 30 of 4 0.58None
Adult carcass10 ± 40 of 4 1.00None
Larval CNS50 ± 74 of 4 5.06Up
Larval Salivary gland11 ± 20 of 4 1.17None
Larval midgut6 ± 20 of 4 0.60None
Larval tubule5 ± 10 of 4 0.60None
Larval hindgut8 ± 20 of 4 0.82None
Larval fat body6 ± 20 of 4 0.60None
Larval trachea3 ± 30 of 4 0.34None
Larval carcass10 ± 10 of 4 1.02None
S2 cells (growing)4 ± 10 of 4 0.41None
Whole fly10 ± 32 of 4

Looking for FBgn0040296. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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