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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040297 through 18771 annotations produced 1 hits



Nhe2 (Nhe2):

Annotation Number : CG9256
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040297
Gbrowse : chr2L:21104598-21132526 (+) // 100.0 //
Probeset : 1635858_s_at
Accessions : protein= NP_001137847; /// NP_001137848; /// NP_001137849; /// NP_001137850; /// NP_001137851; /// NP_610088; /// NP_724311;, nucleotide= NM_001144375; /// NM_001144376; /// NM_001144377; /// NM_001144378; /// NM_001144379; /// NM_136244; /// NM_165355;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity
FlyMine data for FBgn0040297.
BDGP gene expression has embryonic in situ data for NHE2: 31 pix of staining in 29 body parts.
Homophila reports that CG9256 is a close match (1e-45) to human gene (NP_775924), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0040297 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 34 of 4 5.50Up
Head13 22 of 4 1.30None
Eye6 11 of 4 0.62None
Thoracicoabdominal ganglion52 84 of 4 5.40Up
Salivary gland6 20 of 4 0.65None
Crop32 44 of 4 3.30Up
Midgut36 24 of 4 3.70Up
Tubule6 00 of 4 0.60Down
Hindgut14 02 of 4 1.50None
Heart10 01 of 4 1.12None
Fat body5 30 of 4 0.56None
Ovary6 10 of 4 0.60None
Testis12 10 of 4 1.20None
Male accessory glands14 20 of 4 1.50None
Virgin spermatheca6 10 of 4 0.64None
Mated spermatheca7 10 of 4 0.72None
Adult carcass13 30 of 4 1.40None
Larval CNS6 30 of 4 0.71None
Larval Salivary gland10 20 of 4 1.02None
Larval midgut16 00 of 4 1.73Up
Larval tubule51 44 of 4 5.30Up
Larval hindgut85 114 of 4 8.79Up
Larval fat body63 54 of 4 6.50Up
Larval trachea1 10 of 4 0.12Down
Larval carcass7 00 of 4 0.75None
S2 cells (growing)35 24 of 4 3.65Up
Whole fly9 10 of 4

Looking for FBgn0040297. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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