FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040297 through 18771 annotations produced 1 hits

Nhe2 (Nhe2):

Annotation Number : CG9256
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040297
Gbrowse : chr2L:21104598-21132526 (+) // 100.0 //
Probeset : 1635858_s_at
Accessions : protein= NP_001137847; /// NP_001137848; /// NP_001137849; /// NP_001137850; /// NP_001137851; /// NP_610088; /// NP_724311;, nucleotide= NM_001144375; /// NM_001144376; /// NM_001144377; /// NM_001144378; /// NM_001144379; /// NM_136244; /// NM_165355;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity
FlyMine data for FBgn0040297.
BDGP gene expression has embryonic in situ data for NHE2: 31 pix of staining in 29 body parts.
Homophila reports that CG9256 is a close match (1e-45) to human gene (NP_775924), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0040297 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	53 ± 3	4 of 4	5.50	Up
Head	13 ± 2	2 of 4	1.30	None
Eye	6 ± 1	1 of 4	0.62	None
Thoracicoabdominal ganglion	52 ± 8	4 of 4	5.40	Up
Salivary gland	6 ± 2	0 of 4	0.65	None
Crop	32 ± 4	4 of 4	3.30	Up
Midgut	36 ± 2	4 of 4	3.70	Up
Tubule	6 ± 0	0 of 4	0.60	Down
Hindgut	14 ± 0	2 of 4	1.50	None
Heart	10 ± 0	1 of 4	1.12	None
Fat body	5 ± 3	0 of 4	0.56	None
Ovary	6 ± 1	0 of 4	0.60	None
Testis	12 ± 1	0 of 4	1.20	None
Male accessory glands	14 ± 2	0 of 4	1.50	None
Virgin spermatheca	6 ± 1	0 of 4	0.64	None
Mated spermatheca	7 ± 1	0 of 4	0.72	None
Adult carcass	13 ± 3	0 of 4	1.40	None
Larval CNS	6 ± 3	0 of 4	0.71	None
Larval Salivary gland	10 ± 2	0 of 4	1.02	None
Larval midgut	16 ± 0	0 of 4	1.73	Up
Larval tubule	51 ± 4	4 of 4	5.30	Up
Larval hindgut	85 ± 11	4 of 4	8.79	Up
Larval fat body	63 ± 5	4 of 4	6.50	Up
Larval trachea	1 ± 1	0 of 4	0.12	Down
Larval carcass	7 ± 0	0 of 4	0.75	None
S2 cells (growing)	35 ± 2	4 of 4	3.65	Up
Whole fly	9 ± 1	0 of 4

Looking for FBgn0040297. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720