FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040305 through 18771 annotations produced 1 hits

MTF-1 (MTF-1):

Annotation Number : CG3743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040305
Gbrowse : chr3L:9423441-9431809 (+) // 100.0 //
Probeset : 1631619_a_at
Accessions : protein= NP_001097560; /// NP_001097561; /// NP_001097562; /// NP_648311; /// NP_729491;, nucleotide= NM_001104090; /// NM_001104091; /// NM_001104092; /// NM_140054; /// NM_168343;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0040305.
BDGP gene expression has embryonic in situ data for MTF-1: 15 pix of staining in 8 body parts.
Homophila reports that CG3743 is a close match (7e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG3743 interacts with CG6444 .
TRiP has 2 RNAi stocks for FBgn0040305 available for purchase.
VDRC has 4 RNAi stocks for FBgn0040305 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	98 ± 1	4 of 4	0.70	Down
Head	123 ± 8	4 of 4	0.90	None
Eye	88 ± 4	4 of 4	0.65	Down
Thoracicoabdominal ganglion	77 ± 1	4 of 4	0.60	Down
Salivary gland	120 ± 8	4 of 4	0.88	None
Crop	130 ± 3	4 of 4	1.00	None
Midgut	385 ± 3	4 of 4	2.80	Up
Tubule	246 ± 7	4 of 4	1.80	Up
Hindgut	163 ± 5	4 of 4	1.20	Up
Heart	364 ± 10	4 of 4	2.67	Up
Fat body	397 ± 33	4 of 4	2.90	Up
Ovary	225 ± 1	4 of 4	1.60	Up
Testis	21 ± 0	4 of 4	0.20	Down
Male accessory glands	95 ± 8	4 of 4	0.70	Down
Virgin spermatheca	667 ± 46	4 of 4	4.88	Up
Mated spermatheca	466 ± 20	4 of 4	3.41	Up
Adult carcass	148 ± 7	4 of 4	1.10	None
Larval CNS	125 ± 6	4 of 4	0.91	None
Larval Salivary gland	145 ± 17	4 of 4	1.06	None
Larval midgut	614 ± 40	4 of 4	4.49	Up
Larval tubule	335 ± 3	4 of 4	2.40	Up
Larval hindgut	211 ± 5	4 of 4	1.55	Up
Larval fat body	179 ± 5	4 of 4	1.30	Up
Larval trachea	120 ± 5	4 of 4	0.88	None
Larval carcass	86 ± 6	4 of 4	0.63	Down
S2 cells (growing)	205 ± 7	4 of 4	1.50	Up
Whole fly	136 ± 6	4 of 4

Looking for FBgn0040305. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720