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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040305 through 18771 annotations produced 1 hits



MTF-1 (MTF-1):

Annotation Number : CG3743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040305
Gbrowse : chr3L:9423441-9431809 (+) // 100.0 //
Probeset : 1631619_a_at
Accessions : protein= NP_001097560; /// NP_001097561; /// NP_001097562; /// NP_648311; /// NP_729491;, nucleotide= NM_001104090; /// NM_001104091; /// NM_001104092; /// NM_140054; /// NM_168343;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0040305.
BDGP gene expression has embryonic in situ data for MTF-1: 15 pix of staining in 8 body parts.
Homophila reports that CG3743 is a close match (7e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG3743 interacts with CG6444 .
TRiP has 2 RNAi stocks for FBgn0040305 available for purchase.
VDRC has 4 RNAi stocks for FBgn0040305 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 14 of 4 0.70Down
Head123 84 of 4 0.90None
Eye88 44 of 4 0.65Down
Thoracicoabdominal ganglion77 14 of 4 0.60Down
Salivary gland120 84 of 4 0.88None
Crop130 34 of 4 1.00None
Midgut385 34 of 4 2.80Up
Tubule246 74 of 4 1.80Up
Hindgut163 54 of 4 1.20Up
Heart364 104 of 4 2.67Up
Fat body397 334 of 4 2.90Up
Ovary225 14 of 4 1.60Up
Testis21 04 of 4 0.20Down
Male accessory glands95 84 of 4 0.70Down
Virgin spermatheca667 464 of 4 4.88Up
Mated spermatheca466 204 of 4 3.41Up
Adult carcass148 74 of 4 1.10None
Larval CNS125 64 of 4 0.91None
Larval Salivary gland145 174 of 4 1.06None
Larval midgut614 404 of 4 4.49Up
Larval tubule335 34 of 4 2.40Up
Larval hindgut211 54 of 4 1.55Up
Larval fat body179 54 of 4 1.30Up
Larval trachea120 54 of 4 0.88None
Larval carcass86 64 of 4 0.63Down
S2 cells (growing)205 74 of 4 1.50Up
Whole fly136 64 of 4

Looking for FBgn0040305. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime