FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040324 through 18771 annotations produced 1 hits

ephrin (Ephrin):

Annotation Number : CG1862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040324
Gbrowse : chr4:592382-598159 (+) // 100.0 //
Probeset : 1634035_s_at
Accessions : protein= NP_651927; /// NP_726583; /// NP_726584; /// NP_726585;, nucleotide= NM_143670; /// NM_166770; /// NM_166771; /// NM_166772;
Pathway : 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0046875 // ephrin receptor binding // inferred from
FlyMine data for FBgn0040324.
Homophila reports that CG1862 is a close match (9e-14) to human gene CFND;CFNS;EFNB1;EPLG2 (NP_004420), a gene associated with Craniofrontonasal dysplasia, 304110 (3).
BioGrid reports that CG1862 interacts with CG4158 CG1511 CG1511 .
TRiP has 2 RNAi stocks for FBgn0040324 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040324 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	111 ± 5	4 of 4	1.00	None
Head	57 ± 8	4 of 4	0.50	Down
Eye	58 ± 11	4 of 4	0.52	Down
Thoracicoabdominal ganglion	69 ± 9	4 of 4	0.60	Down
Salivary gland	75 ± 10	4 of 4	0.67	Down
Crop	101 ± 4	4 of 4	0.90	None
Midgut	84 ± 1	4 of 4	0.70	Down
Tubule	76 ± 3	4 of 4	0.70	Down
Hindgut	94 ± 1	4 of 4	0.80	Down
Heart	58 ± 3	4 of 4	0.51	Down
Fat body	56 ± 15	4 of 4	0.50	Down
Ovary	280 ± 5	4 of 4	2.50	Up
Testis	54 ± 1	4 of 4	0.50	Down
Male accessory glands	68 ± 2	4 of 4	0.60	Down
Virgin spermatheca	35 ± 2	4 of 4	0.31	Down
Mated spermatheca	39 ± 3	4 of 4	0.35	Down
Adult carcass	49 ± 6	4 of 4	0.40	Down
Larval CNS	72 ± 4	4 of 4	0.64	Down
Larval Salivary gland	90 ± 6	4 of 4	0.80	Down
Larval midgut	72 ± 2	4 of 4	0.64	Down
Larval tubule	204 ± 6	4 of 4	1.80	Up
Larval hindgut	104 ± 7	4 of 4	0.92	None
Larval fat body	125 ± 5	4 of 4	1.10	None
Larval trachea	98 ± 4	4 of 4	0.87	Down
Larval carcass	102 ± 9	4 of 4	0.90	None
S2 cells (growing)	97 ± 5	4 of 4	0.86	None
Whole fly	113 ± 4	4 of 4

Looking for FBgn0040324. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720