FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040340 through 18771 annotations produced 1 hits

TRAM (TRAM):

Annotation Number : CG11642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040340
Gbrowse : chrX:829264-831856 (+) // 100.0 //
Probeset : 1635491_s_at
Accessions : protein= NP_726710; /// NP_726711; /// NP_726712;, nucleotide= NM_166866; /// NM_166867; /// NM_166868;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005811 // lipid particle // inf
FlyMine data for FBgn0040340.
BDGP gene expression has embryonic in situ data for EG:BACR7A4.5: 18 pix of staining in 19 body parts.
BioGrid reports that CG11642 interacts with CG1417 CG17521 CG4612 CG4863 CG5748 CG6141 CG6224 .
VDRC has 5 RNAi stocks for FBgn0040340 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	245 ± 11	4 of 4	0.60	Down
Head	511 ± 40	4 of 4	1.20	None
Eye	223 ± 26	4 of 4	0.52	Down
Thoracicoabdominal ganglion	239 ± 12	4 of 4	0.60	Down
Salivary gland	2169 ± 103	4 of 4	5.10	Up
Crop	578 ± 7	4 of 4	1.40	Up
Midgut	501 ± 22	4 of 4	1.20	None
Tubule	329 ± 56	4 of 4	0.80	None
Hindgut	274 ± 12	4 of 4	0.60	Down
Heart	336 ± 36	4 of 4	0.79	None
Fat body	989 ± 177	4 of 4	2.32	Up
Ovary	410 ± 31	4 of 4	1.00	None
Testis	132 ± 1	4 of 4	0.30	Down
Male accessory glands	4108 ± 142	4 of 4	9.60	Up
Virgin spermatheca	1432 ± 18	4 of 4	3.36	Up
Mated spermatheca	1885 ± 114	4 of 4	4.43	Up
Adult carcass	502 ± 57	4 of 4	1.20	None
Larval CNS	434 ± 28	4 of 4	1.02	None
Larval Salivary gland	5421 ± 119	4 of 4	12.73	Up
Larval midgut	630 ± 16	4 of 4	1.48	Up
Larval tubule	429 ± 21	4 of 4	1.00	None
Larval hindgut	940 ± 67	4 of 4	2.21	Up
Larval fat body	2072 ± 246	4 of 4	4.90	Up
Larval trachea	1527 ± 316	4 of 4	3.59	Up
Larval carcass	1668 ± 155	4 of 4	3.92	Up
S2 cells (growing)	781 ± 17	4 of 4	1.83	Up
Whole fly	425 ± 23	4 of 4

Looking for FBgn0040340. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720