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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040342 through 18771 annotations produced 1 hits


(CG3706):

Annotation Number : CG3706
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040342
Gbrowse : chrX:824962-826704 (-) // 100.0 //
Probeset : 1631873_at
Accessions : protein= NP_652634;, nucleotide= NM_144377;
FlyMine data for FBgn0040342.
BDGP gene expression has embryonic in situ data for EG:BACR7A4.20: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0040342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 10 of 4 0.20Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.20Down
Salivary gland7 ± 40 of 4 0.18Down
Crop2 ± 00 of 4 0.00Down
Midgut400 ± 84 of 4 9.00Up
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.06Down
Fat body2 ± 20 of 4 0.06Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.10Down
Mated spermatheca7 ± 20 of 4 0.17Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.07Down
Larval Salivary gland11 ± 30 of 4 0.25Down
Larval midgut179 ± 184 of 4 4.03Up
Larval tubule4 ± 20 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.04Down
Larval carcass2 ± 00 of 4 0.05Down
S2 cells (growing)3 ± 00 of 4 0.08Down
Whole fly44 ± 73 of 4

Looking for FBgn0040342. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime