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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040343 through 18771 annotations produced 1 hits


Annotation Number : CG3713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040343
Gbrowse : chrX:740672-741201 (-) // 100.0 //
Probeset : 1634701_at
Accessions : protein= NP_652501;, nucleotide= NM_144244;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040343.
BioGrid reports that CG3713 interacts with CG5798 CG8515 CG6363 CG6425 CG9083 .
VDRC has 3 RNAi stocks for FBgn0040343 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 04 of 4 3.40Up
Head16 22 of 4 2.00Up
Eye42 54 of 4 5.10Up
Thoracicoabdominal ganglion14 10 of 4 1.80Up
Salivary gland37 110 of 4 4.44None
Crop9 21 of 4 1.20None
Midgut4 10 of 4 0.50None
Tubule8 10 of 4 1.00None
Hindgut6 30 of 4 0.80None
Heart3 11 of 4 0.46None
Fat body12 70 of 4 1.53None
Ovary5 10 of 4 0.60None
Testis71 44 of 4 8.50Up
Male accessory glands2 00 of 4 0.30Down
Virgin spermatheca10 10 of 4 1.29None
Mated spermatheca16 52 of 4 1.98None
Adult carcass12 50 of 4 1.50None
Larval CNS10 23 of 4 1.22None
Larval Salivary gland3 10 of 4 0.37Down
Larval midgut1 00 of 4 0.21Down
Larval tubule12 10 of 4 1.50None
Larval hindgut2 10 of 4 0.33Down
Larval fat body9 20 of 4 1.10None
Larval trachea2 10 of 4 0.34Down
Larval carcass4 10 of 4 0.59None
S2 cells (growing)5 10 of 4 0.70None
Whole fly8 10 of 4

Looking for FBgn0040343. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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