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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040349 through 18771 annotations produced 1 hits



(CG3699):

Annotation Number : CG3699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040349
Gbrowse : chrX:840690-841517 (-) // 99.4 //
Probeset : 1629853_at
Accessions : protein= NP_569875;, nucleotide= NM_130519;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0040349.
BDGP gene expression has embryonic in situ data for EG:BACR7A4.14: 16 pix of staining in 5 body parts.
Homophila reports that CG3699 is a close match (4e-11) to human gene HSD17B4 (NP_000405), a gene associated with D-bifunctional protein deficiency, 261515 (3).
VDRC has 4 RNAi stocks for FBgn0040349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 23 of 4 0.00Down
Head576 704 of 4 2.50Up
Eye163 624 of 4 0.71None
Thoracicoabdominal ganglion12 33 of 4 0.10Down
Salivary gland6 10 of 4 0.03Down
Crop8 32 of 4 0.00Down
Midgut1671 954 of 4 7.30Up
Tubule4152 854 of 418.10Up
Hindgut84 84 of 4 0.40Down
Heart468 444 of 4 2.05Up
Fat body773 1764 of 4 3.38Up
Ovary1 00 of 4 0.00Down
Testis4 01 of 4 0.00Down
Male accessory glands4 20 of 4 0.00Down
Virgin spermatheca1029 1004 of 4 4.50Up
Mated spermatheca138 604 of 4 0.61None
Adult carcass708 814 of 4 3.10Up
Larval CNS1 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut503 894 of 4 2.20None
Larval tubule2155 934 of 4 9.40Up
Larval hindgut49 34 of 4 0.22Down
Larval fat body113 104 of 4 0.50Down
Larval trachea7 43 of 4 0.03Down
Larval carcass3 10 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly228 224 of 4

Looking for FBgn0040349. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime