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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040350 through 18771 annotations produced 1 hits



(CG3690):

Annotation Number : CG3690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040350
Gbrowse : chrX:843322-845881 (-) // 100.0 //
Probeset : 1628284_at
Accessions : protein= NP_569876;, nucleotide= NM_130520;
FlyMine data for FBgn0040350.
TRiP has 1 RNAi stocks for FBgn0040350 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head9 ± 11 of 4 0.50None
Eye6 ± 11 of 4 0.40None
Thoracicoabdominal ganglion8 ± 13 of 4 0.50None
Salivary gland21 ± 14 of 4 1.33None
Crop11 ± 14 of 4 0.70None
Midgut23 ± 04 of 4 1.40None
Tubule566 ± 214 of 434.30Up
Hindgut14 ± 14 of 4 0.90None
Heart11 ± 14 of 4 0.67None
Fat body27 ± 184 of 4 1.66None
Ovary5 ± 03 of 4 0.30None
Testis9 ± 04 of 4 0.60None
Male accessory glands11 ± 22 of 4 0.70None
Virgin spermatheca14 ± 14 of 4 0.89None
Mated spermatheca11 ± 23 of 4 0.71None
Adult carcass20 ± 22 of 4 1.20None
Larval CNS7 ± 14 of 4 0.48None
Larval Salivary gland8 ± 14 of 4 0.54None
Larval midgut17 ± 34 of 4 1.08None
Larval tubule958 ± 834 of 458.00Up
Larval hindgut8 ± 04 of 4 0.48None
Larval fat body18 ± 23 of 4 1.10None
Larval trachea7 ± 32 of 4 0.46None
Larval carcass12 ± 04 of 4 0.73None
S2 cells (growing)8 ± 04 of 4 0.53None
Whole fly16 ± 44 of 4

Looking for FBgn0040350. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime