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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040352 through 18771 annotations produced 1 hits



(CG14416):

Annotation Number : CG14416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040352
Gbrowse : chrX:2766022-2766854 (-) // 100.0 //
Probeset : 1634632_at
Accessions : protein= NP_570031;, nucleotide= NM_130675;
FlyMine data for FBgn0040352.
BioGrid reports that CG14416 interacts with CG17358 CG3365 CG7285 .
VDRC has 3 RNAi stocks for FBgn0040352 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head1 ± 00 of 4 0.80None
Eye1 ± 00 of 4 0.67None
Thoracicoabdominal ganglion1 ± 00 of 4 1.30None
Salivary gland6 ± 20 of 4 4.38None
Crop2 ± 00 of 4 1.60None
Midgut3 ± 20 of 4 2.60None
Tubule2 ± 00 of 4 1.40None
Hindgut1 ± 00 of 4 0.80None
Heart0 ± 00 of 4 0.43None
Fat body1 ± 00 of 4 0.72None
Ovary0 ± 00 of 4 0.60None
Testis3 ± 10 of 4 2.30None
Male accessory glands7 ± 40 of 4 5.10None
Virgin spermatheca1 ± 00 of 4 1.17None
Mated spermatheca2 ± 10 of 4 1.58None
Adult carcass1 ± 00 of 4 1.20None
Larval CNS1 ± 00 of 4 0.85None
Larval Salivary gland1 ± 00 of 4 0.93None
Larval midgut5 ± 20 of 4 3.72None
Larval tubule1 ± 00 of 4 0.90None
Larval hindgut0 ± 00 of 4 0.57None
Larval fat body2 ± 00 of 4 1.40None
Larval trachea1 ± 00 of 4 0.80None
Larval carcass1 ± 00 of 4 0.95None
S2 cells (growing)0 ± 00 of 4 0.55None
Whole fly1 ± 00 of 4

Looking for FBgn0040352. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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