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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040353 through 18771 annotations produced 1 hits



(CG14417):

Annotation Number : CG14417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040353
Gbrowse : chrX:2769563-2770556 (-) // 100.0 //
Probeset : 1630875_at
Accessions : protein= NP_570032;, nucleotide= NM_130676;
FlyMine data for FBgn0040353.
VDRC has 2 RNAi stocks for FBgn0040353 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head8 00 of 4 1.80Up
Eye2 10 of 4 0.64None
Thoracicoabdominal ganglion9 21 of 4 2.10None
Salivary gland11 41 of 4 2.72None
Crop6 00 of 4 1.40None
Midgut7 10 of 4 1.60None
Tubule4 00 of 4 1.00None
Hindgut4 20 of 4 1.10None
Heart3 00 of 4 0.89None
Fat body8 10 of 4 1.92Up
Ovary4 10 of 4 0.90None
Testis2 00 of 4 0.60None
Male accessory glands12 30 of 4 2.80None
Virgin spermatheca9 11 of 4 2.13None
Mated spermatheca8 21 of 4 2.01None
Adult carcass8 30 of 4 1.90None
Larval CNS4 10 of 4 1.06None
Larval Salivary gland9 20 of 4 2.11None
Larval midgut9 20 of 4 2.08None
Larval tubule5 10 of 4 1.20None
Larval hindgut5 11 of 4 1.17None
Larval fat body12 20 of 4 2.80Up
Larval trachea4 30 of 4 1.03None
Larval carcass8 10 of 4 1.85None
S2 cells (growing)3 00 of 4 0.78None
Whole fly4 00 of 4

Looking for FBgn0040353. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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