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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040355 through 18771 annotations produced 2 hits



(CG3526):

Annotation Number : CG32794
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040355
Gbrowse : chrX:2784452-2785115 (+) // 100.0 //
Probeset : 1638613_at
Accessions : protein= NP_001096871; /// NP_726832;, nucleotide= NM_001103401; /// NM_166954;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0040355.
VDRC has 6 RNAi stocks for FBgn0040355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.80None
Head0 00 of 4 0.80None
Eye1 00 of 4 1.37None
Thoracicoabdominal ganglion0 00 of 4 1.00None
Salivary gland3 10 of 4 4.97None
Crop1 00 of 4 1.40None
Midgut1 00 of 4 1.80None
Tubule1 00 of 4 2.00Up
Hindgut0 00 of 4 1.10None
Heart2 10 of 4 2.93None
Fat body1 00 of 4 2.40Up
Ovary0 00 of 4 1.00None
Testis2 10 of 4 3.30None
Male accessory glands1 00 of 4 1.30None
Virgin spermatheca1 00 of 4 1.70None
Mated spermatheca3 10 of 4 4.90None
Adult carcass1 00 of 4 2.10None
Larval CNS3 20 of 4 5.27None
Larval Salivary gland1 00 of 4 2.40None
Larval midgut0 00 of 4 1.20None
Larval tubule2 00 of 4 2.60None
Larval hindgut1 00 of 4 1.43None
Larval fat body0 00 of 4 1.00None
Larval trachea2 20 of 4 3.40None
Larval carcass0 00 of 4 1.30None
S2 cells (growing)0 00 of 4 0.77None
Whole fly0 00 of 4



(CG3526):

Annotation Number : CG3526
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040355
Gbrowse : chrX:2785994-2787916 (+) // 100.0 //
Probeset : 1635032_a_at
Accessions : protein= NP_001096871; /// NP_726832;, nucleotide= NM_001103401; /// NM_166954;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0040355.
VDRC has 6 RNAi stocks for FBgn0040355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.50None
Head6 21 of 4 0.60None
Eye2 00 of 4 0.18Down
Thoracicoabdominal ganglion8 11 of 4 0.70None
Salivary gland21 33 of 4 1.92None
Crop9 21 of 4 0.90None
Midgut14 12 of 4 1.30None
Tubule8 00 of 4 0.80Down
Hindgut9 12 of 4 0.80None
Heart2 00 of 4 0.19Down
Fat body12 23 of 4 1.11None
Ovary5 11 of 4 0.50Down
Testis101 54 of 4 9.10Up
Male accessory glands10 11 of 4 0.90None
Virgin spermatheca11 12 of 4 1.00None
Mated spermatheca13 42 of 4 1.23None
Adult carcass8 10 of 4 0.70None
Larval CNS6 12 of 4 0.62Down
Larval Salivary gland10 11 of 4 0.92None
Larval midgut9 11 of 4 0.82None
Larval tubule11 02 of 4 1.00None
Larval hindgut8 02 of 4 0.76Down
Larval fat body27 73 of 4 2.40None
Larval trachea6 32 of 4 0.56None
Larval carcass9 00 of 4 0.81None
S2 cells (growing)6 10 of 4 0.60None
Whole fly11 04 of 4

Looking for FBgn0040355. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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