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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040359 through 18771 annotations produced 1 hits


Annotation Number : CG11380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040359
Gbrowse : chrX:1085443-1090705 (+) // 100.0 //
Probeset : 1636915_at
Accessions : protein= NP_569891;, nucleotide= NM_130535;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040359.
BDGP gene expression has embryonic in situ data for EG:BACR42I17.7: 28 pix of staining in 6 body parts.
BioGrid reports that CG11380 interacts with CG13138 CG15865 CG7187 CG12496 CG13046 CG13067 CG14534 CG14639 CG14655 CG1478 CG15737 CG17568 CG17896 CG3075 CG32016 CG33017 CG3800 CG5147 CG5529 CG6137 CG6418 CG6444 CG6779 CG7111 CG8058 CG8086 CG8280 CG8363 CG8580 CG8893 CG9149 CG9470 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
TRiP has 1 RNAi stocks for FBgn0040359 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 1.00None
Head7 21 of 4 1.00None
Eye13 14 of 4 1.98Up
Thoracicoabdominal ganglion3 10 of 4 0.50None
Salivary gland15 11 of 4 2.27Up
Crop4 10 of 4 0.70None
Midgut5 20 of 4 0.80None
Tubule6 00 of 4 1.00None
Hindgut5 00 of 4 0.80None
Heart4 10 of 4 0.71None
Fat body12 61 of 4 1.86None
Ovary5 12 of 4 0.80None
Testis1 00 of 4 0.30Down
Male accessory glands3 10 of 4 0.50None
Virgin spermatheca6 00 of 4 1.02None
Mated spermatheca3 10 of 4 0.56None
Adult carcass9 10 of 4 1.40None
Larval CNS5 31 of 4 0.84None
Larval Salivary gland8 00 of 4 1.19None
Larval midgut1 00 of 4 0.18Down
Larval tubule4 10 of 4 0.70None
Larval hindgut8 13 of 4 1.28None
Larval fat body2 00 of 4 0.40Down
Larval trachea4 00 of 4 0.60None
Larval carcass9 22 of 4 1.36None
S2 cells (growing)2 00 of 4 0.31Down
Whole fly6 12 of 4

Looking for FBgn0040359. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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