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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040360 through 18771 annotations produced 1 hits


Annotation Number : CG14626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040360
Gbrowse : chrX:1078814-1082618 (+) // 99.65 //
Probeset : 1631624_at
Accessions : protein= NP_569890;, nucleotide= NM_130534;
FlyMine data for FBgn0040360.
BDGP gene expression has embryonic in situ data for EG:BACR42I17.6: 32 pix of staining in 16 body parts.
VDRC has 3 RNAi stocks for FBgn0040360 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20Down
Head6 21 of 4 1.50None
Eye3 10 of 4 0.68None
Thoracicoabdominal ganglion1 00 of 4 0.30Down
Salivary gland4 20 of 4 0.94None
Crop3 10 of 4 0.80None
Midgut2 10 of 4 0.60None
Tubule3 00 of 4 0.70Down
Hindgut12 12 of 4 2.90Up
Heart2 10 of 4 0.59None
Fat body2 10 of 4 0.66None
Ovary1 00 of 4 0.40Down
Testis2 00 of 4 0.50None
Male accessory glands3 00 of 4 0.70None
Virgin spermatheca2 10 of 4 0.62None
Mated spermatheca1 00 of 4 0.36Down
Adult carcass9 20 of 4 2.10None
Larval CNS1 10 of 4 0.32Down
Larval Salivary gland2 00 of 4 0.49None
Larval midgut10 00 of 4 2.33Up
Larval tubule1 00 of 4 0.30Down
Larval hindgut36 84 of 4 8.19Up
Larval fat body1 00 of 4 0.40Down
Larval trachea0 00 of 4 0.19Down
Larval carcass1 00 of 4 0.28Down
S2 cells (growing)2 10 of 4 0.55None
Whole fly4 00 of 4

Looking for FBgn0040360. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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