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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040362 through 18771 annotations produced 1 hits


Annotation Number : CG11379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040362
Gbrowse : chrX:1074239-1074902 (+) // 100.0 //
Probeset : 1629660_at
Accessions : protein= NP_569888;, nucleotide= NM_130532;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040362.
BioGrid reports that CG11379 interacts with CG2926 CG31365 .
VDRC has 3 RNAi stocks for FBgn0040362 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.10Down
Head6 01 of 4 0.20Down
Eye6 21 of 4 0.19Down
Thoracicoabdominal ganglion4 20 of 4 0.10Down
Salivary gland10 31 of 4 0.32Down
Crop8 21 of 4 0.20Down
Midgut17 21 of 4 0.50Down
Tubule5 10 of 4 0.20Down
Hindgut5 10 of 4 0.10Down
Heart7 12 of 4 0.21Down
Fat body12 31 of 4 0.38Down
Ovary4 11 of 4 0.10Down
Testis476 214 of 414.20Up
Male accessory glands13 12 of 4 0.40Down
Virgin spermatheca6 10 of 4 0.19Down
Mated spermatheca7 11 of 4 0.21Down
Adult carcass6 20 of 4 0.20Down
Larval CNS6 12 of 4 0.18Down
Larval Salivary gland15 23 of 4 0.46Down
Larval midgut13 02 of 4 0.40Down
Larval tubule8 20 of 4 0.20Down
Larval hindgut8 10 of 4 0.26Down
Larval fat body32 134 of 4 1.00None
Larval trachea2 20 of 4 0.08Down
Larval carcass6 10 of 4 0.20Down
S2 cells (growing)6 13 of 4 0.20Down
Whole fly33 24 of 4

Looking for FBgn0040362. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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