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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040364 through 18771 annotations produced 1 hits



(CG11378):

Annotation Number : CG11378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040364
Gbrowse : chrX:1065461-1066775 (+) // 100.0 //
Probeset : 1634165_at
Accessions : protein= NP_569886;, nucleotide= NM_130530;
FlyMine data for FBgn0040364.
TRiP has 1 RNAi stocks for FBgn0040364 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040364 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 0.20Down
Head213 ± 184 of 4 0.80None
Eye436 ± 294 of 4 1.72Up
Thoracicoabdominal ganglion115 ± 24 of 4 0.50Down
Salivary gland12 ± 30 of 4 0.05Down
Crop306 ± 134 of 4 1.20None
Midgut1878 ± 194 of 4 7.40Up
Tubule12 ± 30 of 4 0.00Down
Hindgut759 ± 224 of 4 3.00Up
Heart98 ± 94 of 4 0.39Down
Fat body65 ± 134 of 4 0.26Down
Ovary30 ± 34 of 4 0.10Down
Testis55 ± 04 of 4 0.20Down
Male accessory glands16 ± 60 of 4 0.10Down
Virgin spermatheca14 ± 20 of 4 0.06Down
Mated spermatheca30 ± 20 of 4 0.12Down
Adult carcass60 ± 44 of 4 0.20Down
Larval CNS12 ± 11 of 4 0.05Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut2444 ± 1374 of 4 9.61Up
Larval tubule15 ± 32 of 4 0.10Down
Larval hindgut303 ± 154 of 4 1.19None
Larval fat body13 ± 10 of 4 0.10Down
Larval trachea34 ± 94 of 4 0.14Down
Larval carcass9 ± 30 of 4 0.04Down
S2 cells (growing)15 ± 00 of 4 0.06Down
Whole fly254 ± 324 of 4

Looking for FBgn0040364. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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