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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040371 through 18771 annotations produced 1 hits


(CG12470):

Annotation Number : CG12470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040371
Gbrowse : chrX:201716-202975 (+) // 100.0 //
Probeset : 1627679_at
Accessions : protein= NP_569838;, nucleotide= NM_130482;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040371.
BioGrid reports that CG12470 interacts with CG13913 CG14356 CG14424 CG1472 CG14864 CG15031 CG15561 CG15597 CG15753 CG1725 CG2108 CG2219 CG30084 CG30387 CG30492 CG3078 CG31029 CG31999 CG33017 CG4060 CG4190 CG4199 CG4286 CG4491 CG5576 CG5854 CG6011 CG6897 CG7357 CG7406 CG7611 CG7860 CG8245 CG8280 CG9437 CG12835 CG13030 CG13032 CG13084 CG13124 CG13287 CG13311 CG13598 CG13627 CG13780 CG1391 CG14044 CG14204 CG14568 CG1461 CG14634 CG14750 CG14928 CG15009 CG15072 CG15109 CG15224 CG15356 CG1618 CG1643 CG16728 CG16935 CG16984 CG17380 CG17801 CG17814 CG18011 CG18271 CG18304 CG18657 CG1873 CG18854 CG2261 CG2849 CG2948 CG3002 CG30035 CG3081 CG31211 CG31482 CG31534 CG31559 CG31797 CG31875 CG3199 CG32046 CG3225 CG32264 CG32354 CG32514 CG32584 CG32793 CG3281 CG3365 CG3727 CG3847 CG4617 CG4634 CG4795 CG4802 CG4853 CG5009 CG5313 CG5390 CG5460 CG5546 CG5591 CG5779 CG5939 CG6203 CG6416 CG6601 CG6741 CG6793 CG6934 CG7073 CG7196 CG7235 CG7467 CG7568 CG7716 CG7815 CG7856 CG7879 CG7952 CG7966 CG8057 CG8086 CG8159 CG8328 CG8344 CG8567 CG8590 CG8811 CG8948 CG8996 CG9117 CG9163 CG9241 CG9331 CG9836 CG9875 CG9890 CG9938 CG9949 CG9986 CG7744 CG8457 CG33528 CG9924 CG6156 .
VDRC has 1 RNAi stocks for FBgn0040371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.00Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart11 ± 12 of 4 0.04Down
Fat body0 ± 00 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis1958 ± 674 of 4 7.60Up
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca2 ± 10 of 4 0.01Down
Adult carcass5 ± 20 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body261 ± 1424 of 4 1.00None
Larval trachea8 ± 111 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)29 ± 14 of 4 0.11Down
Whole fly257 ± 194 of 4

Looking for FBgn0040371. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime