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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040372 through 18771 annotations produced 1 hits



histone methyltransferase (G9a):

Annotation Number : CG2995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040372
Gbrowse : chrX:140039-148046 (+) // 99.82 //
Probeset : 1624780_at
Accessions : protein= NP_569834;, nucleotide= NM_130478;
Pathway : 0000791 // euchromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 //
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0040372.
Homophila reports that CG2995 is a close match (3e-11) to human gene ANK1;SPH2 (NP_065209), a gene associated with Spherocytosis-2 (3).
BioGrid reports that CG2995 interacts with CG8568 .
TRiP has 4 RNAi stocks for FBgn0040372 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 44 of 4 1.60Up
Head26 34 of 4 0.30Down
Eye14 24 of 4 0.18Down
Thoracicoabdominal ganglion82 104 of 4 1.00None
Salivary gland23 33 of 4 0.29Down
Crop34 34 of 4 0.40Down
Midgut40 54 of 4 0.50Down
Tubule31 24 of 4 0.40Down
Hindgut41 14 of 4 0.50Down
Heart14 14 of 4 0.18Down
Fat body40 14 of 4 0.51Down
Ovary358 44 of 4 4.50Up
Testis7 12 of 4 0.10Down
Male accessory glands22 23 of 4 0.30Down
Virgin spermatheca35 64 of 4 0.45Down
Mated spermatheca42 54 of 4 0.53Down
Adult carcass22 24 of 4 0.30Down
Larval CNS101 154 of 4 1.28None
Larval Salivary gland45 44 of 4 0.57Down
Larval midgut31 34 of 4 0.40Down
Larval tubule33 34 of 4 0.40Down
Larval hindgut45 24 of 4 0.58Down
Larval fat body23 14 of 4 0.30Down
Larval trachea23 34 of 4 0.30Down
Larval carcass32 14 of 4 0.41Down
S2 cells (growing)44 24 of 4 0.56Down
Whole fly79 44 of 4

Looking for FBgn0040372. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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