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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040384 through 18771 annotations produced 1 hits



(CG32795):

Annotation Number : CG32795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040384
Gbrowse : chrX:2676938-2683975 (-) // 100.0 //
Probeset : 1634922_s_at
Accessions : protein= NP_570029; /// NP_726830; /// NP_996340;, nucleotide= NM_130673; /// NM_166952; /// NM_206617;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040384.
VDRC has 6 RNAi stocks for FBgn0040384 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 84 of 4 1.20None
Head125 104 of 4 0.90None
Eye144 74 of 4 1.01None
Thoracicoabdominal ganglion105 44 of 4 0.70Down
Salivary gland145 114 of 4 1.02None
Crop232 74 of 4 1.60Up
Midgut398 224 of 4 2.80Up
Tubule263 204 of 4 1.80Up
Hindgut273 64 of 4 1.90Up
Heart166 44 of 4 1.17Up
Fat body277 224 of 4 1.94Up
Ovary166 44 of 4 1.20Up
Testis73 24 of 4 0.50Down
Male accessory glands80 44 of 4 0.60Down
Virgin spermatheca152 54 of 4 1.07None
Mated spermatheca138 84 of 4 0.97None
Adult carcass162 154 of 4 1.10None
Larval CNS96 204 of 4 0.68Down
Larval Salivary gland110 64 of 4 0.77Down
Larval midgut403 154 of 4 2.82Up
Larval tubule156 54 of 4 1.10None
Larval hindgut142 124 of 4 1.00None
Larval fat body111 104 of 4 0.80None
Larval trachea112 134 of 4 0.79Down
Larval carcass113 24 of 4 0.80Down
S2 cells (growing)30 14 of 4 0.21Down
Whole fly142 54 of 4

Looking for FBgn0040384. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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