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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040385 through 18771 annotations produced 1 hits



(CG12496):

Annotation Number : CG12496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040385
Gbrowse : chrX:2303389-2304932 (-) // 100.0 //
Probeset : 1624501_at
Accessions : protein= NP_570003;, nucleotide= NM_130647;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040385.
BDGP gene expression has embryonic in situ data for EG:BACH7M4.4: 4 pix of staining in 1 body parts.
BioGrid reports that CG12496 interacts with CG5280 CG13840 CG14030 CG14044 CG14868 CG15224 CG16747 CG17154 CG17957 CG18398 CG33484 CG33193 CG3668 CG3847 CG4570 CG4755 CG4767 CG5358 CG5692 CG5939 CG6416 CG7352 CG7524 CG8361 CG9331 .
VDRC has 3 RNAi stocks for FBgn0040385 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 7.20None
Head3 11 of 4 8.30None
Eye2 10 of 4 5.61None
Thoracicoabdominal ganglion4 20 of 4 9.20None
Salivary gland9 20 of 422.06Up
Crop3 10 of 4 7.20None
Midgut0 00 of 4 1.80None
Tubule3 00 of 4 7.10Up
Hindgut2 10 of 4 5.30None
Heart3 00 of 4 7.28None
Fat body5 10 of 413.17Up
Ovary1 00 of 4 2.20None
Testis2 00 of 4 4.40None
Male accessory glands7 20 of 415.60None
Virgin spermatheca0 00 of 4 1.28None
Mated spermatheca1 10 of 4 4.00None
Adult carcass4 10 of 4 9.40None
Larval CNS53 74 of 4117.89Up
Larval Salivary gland3 10 of 4 7.33None
Larval midgut3 10 of 4 7.89None
Larval tubule1 00 of 4 4.10None
Larval hindgut2 00 of 4 4.56None
Larval fat body6 20 of 413.80None
Larval trachea3 10 of 4 7.89Up
Larval carcass1 00 of 4 3.00None
S2 cells (growing)2 00 of 4 5.61Up
Whole fly0 00 of 4

Looking for FBgn0040385. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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