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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040388 through 18771 annotations produced 1 hits



CG32796 (boi):

Annotation Number : CG32796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040388
Gbrowse : chrX:2338196-2364036 (-) // 100.0 //
Probeset : 1628774_a_at
Accessions : protein= NP_001096868; /// NP_726811; /// NP_726812;, nucleotide= NM_001103398; /// NM_166940; /// NM_166941;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040388.
BDGP gene expression has embryonic in situ data for EG:BACH59J11.2: 32 pix of staining in 30 body parts.
Homophila reports that CG32796 is a close match (6e-12) to human gene FGFR4 (NP_075252), a gene associated with {Cancer progression/metastasis} (3).
BioGrid reports that CG32796 interacts with CG4865 CG4818 CG9986 .
VDRC has 6 RNAi stocks for FBgn0040388 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 0.20Down
Head12 ± 04 of 4 0.20Down
Eye11 ± 04 of 4 0.20Down
Thoracicoabdominal ganglion12 ± 24 of 4 0.20Down
Salivary gland18 ± 53 of 4 0.31Down
Crop14 ± 04 of 4 0.20Down
Midgut7 ± 04 of 4 0.10Down
Tubule9 ± 13 of 4 0.20Down
Hindgut15 ± 14 of 4 0.30Down
Heart7 ± 14 of 4 0.13Down
Fat body18 ± 74 of 4 0.32Down
Ovary169 ± 74 of 4 2.80Up
Testis15 ± 04 of 4 0.30Down
Male accessory glands8 ± 23 of 4 0.10Down
Virgin spermatheca9 ± 04 of 4 0.15Down
Mated spermatheca7 ± 13 of 4 0.13Down
Adult carcass17 ± 13 of 4 0.30Down
Larval CNS117 ± 64 of 4 1.96Up
Larval Salivary gland31 ± 24 of 4 0.53Down
Larval midgut31 ± 34 of 4 0.53Down
Larval tubule8 ± 14 of 4 0.10Down
Larval hindgut40 ± 24 of 4 0.67Down
Larval fat body12 ± 14 of 4 0.20Down
Larval trachea46 ± 34 of 4 0.78Down
Larval carcass56 ± 54 of 4 0.95None
S2 cells (growing)273 ± 154 of 4 4.56Up
Whole fly59 ± 14 of 4

Looking for FBgn0040388. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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