FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040389 through 18771 annotations produced 1 hits

mitochondrial ribosomal protein L14 (mRpL14):

Annotation Number : CG14048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040389
Gbrowse : chrX:2238027-2238670 (-) // 100.0 //
Probeset : 1639171_at
Accessions : protein= NP_525048;, nucleotide= NM_080309;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0040389.
BDGP gene expression has embryonic in situ data for mRpL14: 20 pix of staining in 14 body parts.
BioGrid reports that CG14048 interacts with CG7196 CG7885 .
VDRC has 2 RNAi stocks for FBgn0040389 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	268 ± 6	4 of 4	1.40	Up
Head	155 ± 16	4 of 4	0.80	None
Eye	225 ± 11	4 of 4	1.19	Up
Thoracicoabdominal ganglion	341 ± 22	4 of 4	1.80	Up
Salivary gland	68 ± 6	3 of 4	0.36	Down
Crop	169 ± 6	4 of 4	0.90	None
Midgut	137 ± 2	4 of 4	0.70	Down
Tubule	192 ± 19	4 of 4	1.00	None
Hindgut	150 ± 7	4 of 4	0.80	Down
Heart	136 ± 5	4 of 4	0.72	Down
Fat body	168 ± 11	4 of 4	0.89	Down
Ovary	355 ± 5	4 of 4	1.90	Up
Testis	51 ± 1	4 of 4	0.30	Down
Male accessory glands	153 ± 11	4 of 4	0.80	None
Virgin spermatheca	183 ± 16	4 of 4	0.97	None
Mated spermatheca	195 ± 17	4 of 4	1.03	None
Adult carcass	158 ± 13	4 of 4	0.80	None
Larval CNS	313 ± 5	4 of 4	1.66	Up
Larval Salivary gland	188 ± 5	4 of 4	1.00	None
Larval midgut	105 ± 7	4 of 4	0.56	Down
Larval tubule	77 ± 4	4 of 4	0.40	Down
Larval hindgut	195 ± 16	4 of 4	1.03	None
Larval fat body	82 ± 11	4 of 4	0.40	Down
Larval trachea	141 ± 19	4 of 4	0.75	Down
Larval carcass	145 ± 15	4 of 4	0.77	None
S2 cells (growing)	214 ± 3	4 of 4	1.14	Up
Whole fly	189 ± 4	4 of 4

Looking for FBgn0040389. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720