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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040389 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L14 (mRpL14):

Annotation Number : CG14048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040389
Gbrowse : chrX:2238027-2238670 (-) // 100.0 //
Probeset : 1639171_at
Accessions : protein= NP_525048;, nucleotide= NM_080309;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0040389.
BDGP gene expression has embryonic in situ data for mRpL14: 20 pix of staining in 14 body parts.
BioGrid reports that CG14048 interacts with CG7196 CG7885 .
VDRC has 2 RNAi stocks for FBgn0040389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain268 64 of 4 1.40Up
Head155 164 of 4 0.80None
Eye225 114 of 4 1.19Up
Thoracicoabdominal ganglion341 224 of 4 1.80Up
Salivary gland68 63 of 4 0.36Down
Crop169 64 of 4 0.90None
Midgut137 24 of 4 0.70Down
Tubule192 194 of 4 1.00None
Hindgut150 74 of 4 0.80Down
Heart136 54 of 4 0.72Down
Fat body168 114 of 4 0.89Down
Ovary355 54 of 4 1.90Up
Testis51 14 of 4 0.30Down
Male accessory glands153 114 of 4 0.80None
Virgin spermatheca183 164 of 4 0.97None
Mated spermatheca195 174 of 4 1.03None
Adult carcass158 134 of 4 0.80None
Larval CNS313 54 of 4 1.66Up
Larval Salivary gland188 54 of 4 1.00None
Larval midgut105 74 of 4 0.56Down
Larval tubule77 44 of 4 0.40Down
Larval hindgut195 164 of 4 1.03None
Larval fat body82 114 of 4 0.40Down
Larval trachea141 194 of 4 0.75Down
Larval carcass145 154 of 4 0.77None
S2 cells (growing)214 34 of 4 1.14Up
Whole fly189 44 of 4

Looking for FBgn0040389. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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