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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040391 through 18771 annotations produced 1 hits



/// (CG2854 /// CG33218):

Annotation Number : CG2854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040391
Gbrowse : chrX:2221160-2222974 (+) // 100.0 //
Probeset : 1640548_at
Accessions : protein= NP_569999;, nucleotide= NM_130643;
FlyMine data for FBgn0040391.
VDRC has 3 RNAi stocks for FBgn0040391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.19Down
Crop1 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.04Down
Fat body1 ± 00 of 4 0.05Down
Ovary2 ± 00 of 4 0.10Down
Testis385 ± 184 of 416.50Up
Male accessory glands5 ± 30 of 4 0.20Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.07Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body20 ± 121 of 4 0.90None
Larval trachea0 ± 00 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.04Down
Whole fly23 ± 13 of 4

Looking for FBgn0040391. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime