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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040392 through 18771 annotations produced 1 hits



(CG14050):

Annotation Number : CG14050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040392
Gbrowse : chrX:2218858-2219723 (-) // 100.0 //
Probeset : 1624701_at
Accessions : protein= NP_569998;, nucleotide= NM_130642;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0040392.
TRiP has 1 RNAi stocks for FBgn0040392 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 1.30None
Head13 ± 24 of 4 2.50Up
Eye10 ± 14 of 4 1.98Up
Thoracicoabdominal ganglion10 ± 21 of 4 1.90None
Salivary gland30 ± 23 of 4 5.63Up
Crop18 ± 12 of 4 3.40Up
Midgut16 ± 10 of 4 3.00Up
Tubule4 ± 10 of 4 0.80None
Hindgut9 ± 12 of 4 1.70None
Heart9 ± 12 of 4 1.69None
Fat body16 ± 31 of 4 2.98Up
Ovary7 ± 11 of 4 1.30None
Testis6 ± 10 of 4 1.20None
Male accessory glands17 ± 40 of 4 3.20None
Virgin spermatheca11 ± 23 of 4 2.08None
Mated spermatheca14 ± 11 of 4 2.65Up
Adult carcass15 ± 20 of 4 2.90Up
Larval CNS21 ± 24 of 4 3.85Up
Larval Salivary gland24 ± 34 of 4 4.54Up
Larval midgut13 ± 20 of 4 2.41Up
Larval tubule3 ± 10 of 4 0.70None
Larval hindgut7 ± 22 of 4 1.44None
Larval fat body61 ± 54 of 411.20Up
Larval trachea11 ± 14 of 4 2.17Up
Larval carcass16 ± 13 of 4 3.03Up
S2 cells (growing)24 ± 14 of 4 4.44Up
Whole fly5 ± 10 of 4

Looking for FBgn0040392. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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