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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040394 through 18771 annotations produced 1 hits



(CG16903):

Annotation Number : CG16903
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040394
Gbrowse : chrX:1972375-1974416 (-) // 99.74 //
Probeset : 1633560_at
Accessions : protein= NP_569980;, nucleotide= NM_130624;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0016251 // general RNA polymerase II transcription factor activity // inferred from sequence or structural similarity //
FlyMine data for FBgn0040394.
BDGP gene expression has embryonic in situ data for EG:67A9.2: 20 pix of staining in 2 body parts.
Homophila reports that CG16903 is a close match (2e-15) to human gene FAM58A;STAR (NP_689487), a gene associated with STAR syndrome, 300707 (3).
BioGrid reports that CG16903 interacts with CG18584 .
VDRC has 2 RNAi stocks for FBgn0040394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 44 of 4 1.00None
Head128 24 of 4 0.90Down
Eye89 14 of 4 0.60Down
Thoracicoabdominal ganglion183 64 of 4 1.20Up
Salivary gland189 94 of 4 1.27Up
Crop198 84 of 4 1.30Up
Midgut98 54 of 4 0.70Down
Tubule163 34 of 4 1.10Up
Hindgut134 44 of 4 0.90None
Heart97 34 of 4 0.66Down
Fat body128 44 of 4 0.86Down
Ovary263 44 of 4 1.80Up
Testis84 54 of 4 0.60Down
Male accessory glands198 114 of 4 1.30Up
Virgin spermatheca131 84 of 4 0.88None
Mated spermatheca144 94 of 4 0.97None
Adult carcass132 24 of 4 0.90Down
Larval CNS266 214 of 4 1.79Up
Larval Salivary gland210 104 of 4 1.41Up
Larval midgut98 54 of 4 0.66Down
Larval tubule150 44 of 4 1.00None
Larval hindgut145 64 of 4 0.98None
Larval fat body102 44 of 4 0.70Down
Larval trachea240 214 of 4 1.61Up
Larval carcass160 44 of 4 1.08None
S2 cells (growing)370 114 of 4 2.49Up
Whole fly148 54 of 4

Looking for FBgn0040394. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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