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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040397 through 18771 annotations produced 4 hits



(CG3655):

Annotation Number : S.CX000096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040397
Gbrowse : chrX:990527-996570 (-) // 100.0 //
Probeset : 1623230_s_at
Accessions : protein= NP_001096862; /// NP_569882;, nucleotide= NM_001103392; /// NM_130526;
FlyMine data for FBgn0040397.
BDGP gene expression has embryonic in situ data for EG:103E12.3: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30None
Head6 20 of 4 0.70None
Eye4 11 of 4 0.51None
Thoracicoabdominal ganglion3 10 of 4 0.30None
Salivary gland4 20 of 4 0.47None
Crop4 21 of 4 0.50None
Midgut9 11 of 4 1.00None
Tubule5 00 of 4 0.60Down
Hindgut8 12 of 4 0.90None
Heart4 00 of 4 0.48None
Fat body11 22 of 4 1.15None
Ovary6 14 of 4 0.60None
Testis2 00 of 4 0.30None
Male accessory glands10 20 of 4 1.10None
Virgin spermatheca11 10 of 4 1.22None
Mated spermatheca7 10 of 4 0.82None
Adult carcass10 31 of 4 1.10None
Larval CNS3 00 of 4 0.40None
Larval Salivary gland4 10 of 4 0.45None
Larval midgut13 14 of 4 1.40None
Larval tubule4 00 of 4 0.50None
Larval hindgut5 21 of 4 0.55None
Larval fat body9 31 of 4 1.00None
Larval trachea4 20 of 4 0.42None
Larval carcass7 00 of 4 0.80None
S2 cells (growing)5 10 of 4 0.57None
Whole fly9 20 of 4



(CG3655):

Annotation Number : S.CX000096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040397
Gbrowse : chrX:990527-996570 (-) // 100.0 //
Probeset : 1639872_at
Accessions : protein= NP_001096862; /// NP_569882;, nucleotide= NM_001103392; /// NM_130526;
FlyMine data for FBgn0040397.
BDGP gene expression has embryonic in situ data for EG:103E12.3: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.60None
Head10 30 of 4 1.20None
Eye5 10 of 4 0.61None
Thoracicoabdominal ganglion4 20 of 4 0.50None
Salivary gland22 50 of 4 2.66None
Crop15 23 of 4 1.90None
Midgut9 40 of 4 1.10None
Tubule3 00 of 4 0.40Down
Hindgut7 20 of 4 0.90None
Heart2 10 of 4 0.33None
Fat body5 20 of 4 0.71None
Ovary8 10 of 4 1.00None
Testis1 00 of 4 0.10None
Male accessory glands6 20 of 4 0.80None
Virgin spermatheca3 00 of 4 0.44None
Mated spermatheca2 10 of 4 0.33None
Adult carcass7 30 of 4 0.90None
Larval CNS4 20 of 4 0.53None
Larval Salivary gland2 10 of 4 0.25None
Larval midgut5 20 of 4 0.65None
Larval tubule9 50 of 4 1.10None
Larval hindgut5 10 of 4 0.66None
Larval fat body3 10 of 4 0.40None
Larval trachea4 40 of 4 0.53None
Larval carcass7 10 of 4 0.89None
S2 cells (growing)2 10 of 4 0.29None
Whole fly8 30 of 4



(CG3655):

Annotation Number : S.CX000097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040397
Gbrowse : chrX:1013723-1036400 (-) // 100.0 //
Probeset : 1628031_at
Accessions : protein= NP_001096862; /// NP_569882;, nucleotide= NM_001103392; /// NM_130526;
FlyMine data for FBgn0040397.
BDGP gene expression has embryonic in situ data for EG:103E12.3: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 1.80None
Head3 01 of 4 1.00None
Eye4 10 of 4 1.46None
Thoracicoabdominal ganglion6 10 of 4 2.00None
Salivary gland11 31 of 4 3.79None
Crop6 11 of 4 2.00None
Midgut3 10 of 4 1.10None
Tubule4 00 of 4 1.40Up
Hindgut5 20 of 4 1.70None
Heart1 00 of 4 0.53None
Fat body4 30 of 4 1.29None
Ovary4 11 of 4 1.50None
Testis2 00 of 4 0.80None
Male accessory glands2 10 of 4 0.90None
Virgin spermatheca4 00 of 4 1.40None
Mated spermatheca5 12 of 4 1.69None
Adult carcass6 20 of 4 2.00None
Larval CNS2 10 of 4 0.90None
Larval Salivary gland5 10 of 4 1.87None
Larval midgut3 10 of 4 1.18None
Larval tubule6 10 of 4 1.90None
Larval hindgut4 00 of 4 1.53None
Larval fat body5 10 of 4 1.80None
Larval trachea0 00 of 4 0.19None
Larval carcass2 10 of 4 0.83None
S2 cells (growing)5 20 of 4 1.69None
Whole fly3 10 of 4



(CG3655):

Annotation Number : CG3655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040397
Gbrowse : chrX:967938-976472 (-) // 99.83 //
Probeset : 1625537_at
Accessions : protein= NP_001096862; /// NP_569882;, nucleotide= NM_001103392; /// NM_130526;
FlyMine data for FBgn0040397.
BDGP gene expression has embryonic in situ data for EG:103E12.3: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 24 of 4 1.30Up
Head91 34 of 4 1.80Up
Eye100 74 of 4 2.03Up
Thoracicoabdominal ganglion57 04 of 4 1.20Up
Salivary gland1054 494 of 421.30Up
Crop519 134 of 410.50Up
Midgut67 64 of 4 1.40None
Tubule168 114 of 4 3.40Up
Hindgut112 64 of 4 2.30Up
Heart9 12 of 4 0.18Down
Fat body16 44 of 4 0.33Down
Ovary96 54 of 4 1.90Up
Testis4 00 of 4 0.10Down
Male accessory glands12 20 of 4 0.30Down
Virgin spermatheca7 11 of 4 0.15Down
Mated spermatheca7 10 of 4 0.15Down
Adult carcass60 64 of 4 1.20None
Larval CNS72 94 of 4 1.47Up
Larval Salivary gland3 10 of 4 0.06Down
Larval midgut140 94 of 4 2.84Up
Larval tubule211 34 of 4 4.30Up
Larval hindgut114 64 of 4 2.31Up
Larval fat body3 10 of 4 0.10Down
Larval trachea83 44 of 4 1.68Up
Larval carcass88 204 of 4 1.78None
S2 cells (growing)2 00 of 4 0.06Down
Whole fly49 14 of 4

Looking for FBgn0040397. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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