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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040398 through 18771 annotations produced 1 hits



(CG14629):

Annotation Number : CG14629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040398
Gbrowse : chrX:945569-946661 (+) // 100.0 //
Probeset : 1636804_at
Accessions : protein= NP_569881;, nucleotide= NM_130525;
FlyMine data for FBgn0040398.
BDGP gene expression has embryonic in situ data for EG:103E12.2: 33 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0040398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 84 of 4 0.20Down
Head2135 964 of 4 3.50Up
Eye862 1664 of 4 1.40None
Thoracicoabdominal ganglion71 44 of 4 0.10Down
Salivary gland12 50 of 4 0.02Down
Crop50 74 of 4 0.10Down
Midgut746 144 of 4 1.20Up
Tubule195 124 of 4 0.30Down
Hindgut193 164 of 4 0.30Down
Heart2672 734 of 4 4.34Up
Fat body3291 1534 of 4 5.35Up
Ovary7 00 of 4 0.00Down
Testis29 23 of 4 0.00Down
Male accessory glands5 30 of 4 0.00Down
Virgin spermatheca1431 824 of 4 2.33Up
Mated spermatheca1327 474 of 4 2.16Up
Adult carcass2242 764 of 4 3.60Up
Larval CNS2 10 of 4 0.00Down
Larval Salivary gland86 64 of 4 0.14Down
Larval midgut777 104 of 4 1.26Up
Larval tubule1077 364 of 4 1.80Up
Larval hindgut147 114 of 4 0.24Down
Larval fat body5598 6724 of 4 9.10Up
Larval trachea116 234 of 4 0.19Down
Larval carcass248 34 of 4 0.40Down
S2 cells (growing)964 284 of 4 1.57Up
Whole fly615 124 of 4

Looking for FBgn0040398. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime