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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040465 through 18771 annotations produced 1 hits



Dorsal interacting protein 3 (Dip3):

Annotation Number : CG12767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040465
Gbrowse : chr2R:14016004-14017753 (+) // 100.0 //
Probeset : 1631536_at
Accessions : protein= NP_525003;, nucleotide= NM_080264;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0016604 //
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0040465.
BDGP gene expression has embryonic in situ data for Dip3: 15 pix of staining in 14 body parts.
BioGrid reports that CG12767 interacts with CG12767 CG1487 CG2948 CG4349 CG6518 CG17154 CG2934 CG2986 CG3018 CG4820 CG8924 CG33522 .
TRiP has 1 RNAi stocks for FBgn0040465 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040465 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain306 44 of 4 9.40Up
Head69 54 of 4 2.10Up
Eye75 74 of 4 2.31Up
Thoracicoabdominal ganglion211 34 of 4 6.50Up
Salivary gland9 60 of 4 0.29Down
Crop5 10 of 4 0.20Down
Midgut7 10 of 4 0.20Down
Tubule6 00 of 4 0.20Down
Hindgut5 10 of 4 0.20Down
Heart3 10 of 4 0.12Down
Fat body9 20 of 4 0.28Down
Ovary73 24 of 4 2.30Up
Testis18 34 of 4 0.60Down
Male accessory glands12 10 of 4 0.40Down
Virgin spermatheca6 10 of 4 0.19Down
Mated spermatheca5 20 of 4 0.16Down
Adult carcass8 40 of 4 0.30Down
Larval CNS411 24 of 412.58Up
Larval Salivary gland8 10 of 4 0.25Down
Larval midgut5 10 of 4 0.16Down
Larval tubule7 01 of 4 0.20Down
Larval hindgut5 00 of 4 0.15Down
Larval fat body8 20 of 4 0.20Down
Larval trachea3 20 of 4 0.11Down
Larval carcass8 10 of 4 0.25Down
S2 cells (growing)10 12 of 4 0.32Down
Whole fly32 14 of 4

Looking for FBgn0040465. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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