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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040487 through 18771 annotations produced 2 hits



Brother of Bearded A /// (BobA /// CG13465):

Annotation Number : CG13465
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040487 /// FBgn0040809
Gbrowse : chr3L:14937155-14937392 (-) // 100.0 // /// chr3L:14938931-14939161 (-) // 96.62 //
Probeset : 1637569_s_at
Accessions : protein= NP_525000; /// NP_525087;, nucleotide= NM_080261; /// NM_080348;
FlyMine data for FBgn0040487 /// FBgn0040809.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30None
Head2 00 of 4 0.20None
Eye1 10 of 4 0.13None
Thoracicoabdominal ganglion3 20 of 4 0.30None
Salivary gland5 10 of 4 0.42None
Crop4 10 of 4 0.40None
Midgut1 00 of 4 0.10None
Tubule3 00 of 4 0.30Down
Hindgut3 00 of 4 0.20None
Heart0 00 of 4 0.03None
Fat body4 20 of 4 0.36None
Ovary0 00 of 4 0.10None
Testis0 00 of 4 0.10None
Male accessory glands3 10 of 4 0.30None
Virgin spermatheca1 00 of 4 0.15None
Mated spermatheca2 10 of 4 0.20None
Adult carcass3 10 of 4 0.20None
Larval CNS11 23 of 4 0.91None
Larval Salivary gland1 00 of 4 0.12None
Larval midgut1 00 of 4 0.11None
Larval tubule6 11 of 4 0.50None
Larval hindgut0 00 of 4 0.05None
Larval fat body2 10 of 4 0.20None
Larval trachea1 10 of 4 0.10None
Larval carcass0 00 of 4 0.07None
S2 cells (growing)0 00 of 4 0.06None
Whole fly12 71 of 4



Brother of Bearded A (BobA):

Annotation Number : CG12487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040487
Gbrowse : chr3L:14938598-14939212 (-) // 100.0 // /// chr3L:14936831-14937436 (-) // 97.39 //
Probeset : 1628084_at
Accessions : protein= NP_525087;, nucleotide= NM_080348;
FlyMine data for FBgn0040487.
VDRC has 2 RNAi stocks for FBgn0040487 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10None
Head0 00 of 4 0.00None
Eye2 10 of 4 0.08None
Thoracicoabdominal ganglion1 00 of 4 0.00None
Salivary gland13 40 of 4 0.42None
Crop5 21 of 4 0.20None
Midgut2 00 of 4 0.10None
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10None
Heart3 10 of 4 0.10None
Fat body8 33 of 4 0.27None
Ovary0 00 of 4 0.00None
Testis2 00 of 4 0.10None
Male accessory glands7 11 of 4 0.30None
Virgin spermatheca4 12 of 4 0.15None
Mated spermatheca3 10 of 4 0.11None
Adult carcass7 20 of 4 0.20None
Larval CNS24 64 of 4 0.81None
Larval Salivary gland5 10 of 4 0.17None
Larval midgut4 20 of 4 0.14None
Larval tubule3 00 of 4 0.10None
Larval hindgut3 00 of 4 0.11None
Larval fat body7 10 of 4 0.20None
Larval trachea3 20 of 4 0.12None
Larval carcass3 10 of 4 0.11None
S2 cells (growing)0 00 of 4 0.03None
Whole fly30 183 of 4

Looking for FBgn0040487. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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