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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040491 through 18771 annotations produced 1 hits



48A-E Bcl-2-like (Buffy):

Annotation Number : CG8238
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040491
Gbrowse : chr2R:7566977-7576264 (+) // 100.0 //
Probeset : 1623425_at
Accessions : protein= NP_523702;, nucleotide= NM_078978;
FlyMine data for FBgn0040491.
BDGP gene expression has embryonic in situ data for Buffy: 4 pix of staining in 1 body parts.
BioGrid reports that CG8238 interacts with CG12284 CG5123 CG4319 CG4345 CG33134 .
TRiP has 2 RNAi stocks for FBgn0040491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 0.30Down
Head119 ± 84 of 4 2.40Up
Eye300 ± 84 of 4 6.03Up
Thoracicoabdominal ganglion23 ± 24 of 4 0.50Down
Salivary gland2127 ± 934 of 442.70Up
Crop1578 ± 824 of 431.70Up
Midgut122 ± 74 of 4 2.40Up
Tubule71 ± 44 of 4 1.40Up
Hindgut291 ± 24 of 4 5.80Up
Heart79 ± 44 of 4 1.60Up
Fat body22 ± 34 of 4 0.45Down
Ovary21 ± 04 of 4 0.40Down
Testis49 ± 34 of 4 1.00None
Male accessory glands413 ± 424 of 4 8.30Up
Virgin spermatheca60 ± 24 of 4 1.22None
Mated spermatheca74 ± 64 of 4 1.49Up
Adult carcass41 ± 14 of 4 0.80None
Larval CNS20 ± 24 of 4 0.41Down
Larval Salivary gland37 ± 54 of 4 0.74None
Larval midgut32 ± 54 of 4 0.66Down
Larval tubule53 ± 34 of 4 1.10None
Larval hindgut66 ± 34 of 4 1.33Up
Larval fat body8 ± 22 of 4 0.20Down
Larval trachea563 ± 994 of 411.30Up
Larval carcass21 ± 14 of 4 0.43Down
S2 cells (growing)6 ± 11 of 4 0.12Down
Whole fly49 ± 44 of 4

Looking for FBgn0040491. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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