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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040503 through 18771 annotations produced 1 hits



(CG7763):

Annotation Number : CG7763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040503
Gbrowse : chr2R:7302256-7302967 (+) // 100.0 //
Probeset : 1626144_at
Accessions : protein= NP_610685;, nucleotide= NM_136841;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0040503.
BioGrid reports that CG7763 interacts with CG8998 CG9193 .
VDRC has 3 RNAi stocks for FBgn0040503 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10None
Head8 ± 11 of 4 0.30None
Eye9 ± 41 of 4 0.34None
Thoracicoabdominal ganglion1 ± 00 of 4 0.00None
Salivary gland16 ± 51 of 4 0.60None
Crop6 ± 22 of 4 0.20None
Midgut1 ± 00 of 4 0.10None
Tubule5 ± 21 of 4 0.20Down
Hindgut9 ± 12 of 4 0.30None
Heart87 ± 134 of 4 3.21Up
Fat body467 ± 1394 of 417.11Up
Ovary0 ± 00 of 4 0.00None
Testis3 ± 00 of 4 0.10None
Male accessory glands1 ± 00 of 4 0.00None
Virgin spermatheca701 ± 1214 of 425.68Up
Mated spermatheca818 ± 3244 of 429.99None
Adult carcass39 ± 74 of 4 1.40None
Larval CNS0 ± 00 of 4 0.02None
Larval Salivary gland32 ± 24 of 4 1.17None
Larval midgut18 ± 44 of 4 0.69None
Larval tubule35 ± 24 of 4 1.30None
Larval hindgut77 ± 124 of 4 2.85Up
Larval fat body2803 ± 3174 of 4102.70Up
Larval trachea20 ± 174 of 4 0.76None
Larval carcass23 ± 64 of 4 0.85None
S2 cells (growing)1 ± 00 of 4 0.05None
Whole fly27 ± 84 of 4

Looking for FBgn0040503. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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